Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0256 ATGGAAAGCCAAGATCCACAAAACTCTCCTCCCTTCCTTTTCACTCCCATGTCAATGATGCAAAACCCAAATTTGGAACCTCAAGGCTTGCATGATGACATAGACTGGGTTAGCCTTTTCTCTGGCCAGAGCAACTTCCTTGCGGATGCCAATGCGATGATGGAATGCGCTTCTTCTTCTTCTTCTTCTTCGTCCTCCTCGTGTGCTTTGATGGCTGAAAAGAGTGATAAAGAGACAATGAAAGGGGGTAGATTGAGGAAGACAACACGACCCAGGTTTGCGTTTCAGACGAGAAGTGAAGATGATATTTTGGATGATGGTTATCGTTGGAGGAAGTATGGACAGAAAGCTGTGAAGAACAACATACATCCCAGAAGCTACTACCGTTGCACGCATCATACATGCAATGTGAAGAAACAGGTGCAAAGGTTATCCAAAGACACAAGCATCGTGGTGACCACTTACGAGGGAATTCACAATCACCCATGCGAAAAGCTCATGGAAACCCTAACGCCCCTTCTGAGGCAAATGCAGTTTCTCTCTAGGTTAGCTTCCAATAATAACGGCGGTCCTTCTTCTCTGCTATAG 588 0.4558 MESQDPQNSPPFLFTPMSMMQNPNLEPQGLHDDIDWVSLFSGQSNFLADANAMMECASSSSSSSSSSCALMAEKSDKETMKGGRLRKTTRPRFAFQTRSEDDILDDGYRWRKYGQKAVKNNIHPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHPCEKLMETLTPLLRQMQFLSRLASNNNGGPSSLL* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0256 195 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 21 179 IPR044810 GO:0003700
Gso16g0256 195 ProSiteProfiles WRKY domain profile. 99 164 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso16g0256 195 Pfam WRKY DNA -binding domain 105 162 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso16g0256 195 SMART WRKY_cls 104 163 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso16g0256 195 Gene3D WRKY domain 89 163 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso16g0256 195 SUPERFAMILY WRKY DNA-binding domain 96 163 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso16g0256 195 PANTHER WRKY TRANSCRIPTION FACTOR 43-RELATED 21 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0256 Gso-Chr16 2931007 2933566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0256 81 184 WRKY Transcription Factor Family AT1G64000 76.923 1.72e-59 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso16g0256 WRKY 5.8e-25 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1924 18 51637720 51639623 Gso16g0256 16 2931007 2933566 PCT
Gso9g2096 9 45254780 45256620 Gso16g0256 16 2931007 2933566 PCT
Gso16g0256 16 2931007 2933566 Gso18g1924 18 51637720 51639623 PCT
Gso16g0256 16 2931007 2933566 Gso9g2096 9 45254780 45256620 PCT