Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0252 ATGTCCTCCTTCAACCCTTTCTCCCCTCCACCACCCACCCCTTACCTCACCAACCTCGGCTTCGGCTACTCCATCGCCATCGCCCTCGGCGTCCTCTTCCTCCTCTCCACCCTCATCCTCTCCTCCTACCTCTGCTGCCGCACCCTCCGCCACCGCAACAACAACCGCCACACCCCCCGTAACAACACCTCCGATGGCATCGTCCTCCCGCGCGTGATCTTCGTCGCCGAGGACGACGACGATGACGCCACCCGCCAGAACGACGCCGTCACCGGCCTCGACCAGGCCGTAATAAACTCCTACCCCAAGTTTCCTTACGTTAAGGAAGGTGATTACGACAGCACCTGCTCGATCTGTCTGTGCGAGTACAAGGATTCGGAGATGCTGAGGATGATGCCAGAGTGTCGACACTACTTTCACTTGTGTTGTCTCGACCCGTGGCTCAAGCTTAACGGGTCATGCCCCGTTTGCCGGAACTCTCCCATGCCAACGCCGCTGTCGACGCCGCTGCAGGAGGTCGTGCCGCTCTCACAGTACGCCGATGCCAGGGCGAGGAGGTGA 561 0.6078 MSSFNPFSPPPPTPYLTNLGFGYSIAIALGVLFLLSTLILSSYLCCRTLRHRNNNRHTPRNNTSDGIVLPRVIFVAEDDDDDATRQNDAVTGLDQAVINSYPKFPYVKEGDYDSTCSICLCEYKDSEMLRMMPECRHYFHLCCLDPWLKLNGSCPVCRNSPMPTPLSTPLQEVVPLSQYADARARR* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0252 186 ProSiteProfiles Zinc finger RING-type profile. 116 158 IPR001841 -
Gso16g0252 186 Pfam Ring finger domain 115 158 IPR001841 -
Gso16g0252 186 PANTHER RING-H2 FINGER PROTEIN ATL67 11 185 IPR044289 GO:0016567|GO:0016740
Gso16g0252 186 SUPERFAMILY RING/U-box 97 163 - -
Gso16g0252 186 CDD RING-H2_PA-TM-RING 115 158 - -
Gso16g0252 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 163 IPR013083 -
Gso16g0252 186 SMART ring_2 116 157 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0252 Gso-Chr16 2908503 2909661 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0252 9 178 C3H Transcription Factor Family AT5G06490 39.572 8.44e-38 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0252 - - gmx:112997685 344.739
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0553 7 5605876 5607125 Gso16g0252 16 2908503 2909661 GST
Gso18g1915 18 51571528 51572720 Gso16g0252 16 2908503 2909661 PCT
Gso9g2088 9 45197749 45198975 Gso16g0252 16 2908503 2909661 PCT