Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0243 ATGCCGAAGAACAAGGGAAAGGGAGGAAAGAACCGGAAGCGCGGTAAGAACGAGGCGGACGACGAGAAGCGGGAGCTGGTATTCAAGGAGGACGGACAGGAATACGCGCAGGTTCTCCGAATGCTCGGAAACGGTCGCTGCGAAGCGATGTGCATCGACGGCACCAAGCGCCTCTGCCACATCCGCGGCAAGATGCACAAGAAGGTCTGGATCGCCGCCGGCGACATCATCCTCGTCGGCCTCCGCGACTACCAGGACGACAAGGCTGACGTCATCCTCAAGTACATGCCCGATGAGGCCCGCCTCCTCAAGGCCTACGGCGAGCTTCCCGACACCACCAGGCTCAACGAGGGCATCGGCGCCGGCCTTGATGAGGAGGAGGACGGTTCCGGGAATGATTATATTGAGTTCGAGGATGAGGATATTGATAAGATTTGA 438 0.589 MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPDTTRLNEGIGAGLDEEEDGSGNDYIEFEDEDIDKI* 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0243 145 MobiDBLite consensus disorder prediction 118 145 - -
Gso16g0243 145 MobiDBLite consensus disorder prediction 1 25 - -
Gso16g0243 145 Gene3D - 2 145 IPR012340 -
Gso16g0243 145 Pfam Translation initiation factor 1A / IF-1 32 93 IPR006196 GO:0003723|GO:0003743|GO:0006413
Gso16g0243 145 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 1A 1 145 - -
Gso16g0243 145 MobiDBLite consensus disorder prediction 122 145 - -
Gso16g0243 145 SUPERFAMILY Nucleic acid-binding proteins 2 144 IPR012340 -
Gso16g0243 145 CDD S1_IF1A 33 109 IPR001253 GO:0003743|GO:0006413
Gso16g0243 145 SMART eIF1neu4 28 110 IPR001253 GO:0003743|GO:0006413
Gso16g0243 145 ProSitePatterns Eukaryotic initiation factor 1A signature. 41 63 IPR018104 GO:0003743|GO:0006413
Gso16g0243 145 Hamap Translation initiation factor 1A [eif1a]. 16 110 IPR001253 GO:0003743|GO:0006413
Gso16g0243 145 ProSiteProfiles S1 domain IF1 type profile. 22 96 IPR006196 GO:0003723|GO:0003743|GO:0006413
Gso16g0243 145 TIGRFAM eIF-1A: translation initiation factor eIF-1A 14 110 IPR001253 GO:0003743|GO:0006413
Gso16g0243 145 PANTHER EIF-1A 1 145 IPR001253 GO:0003743|GO:0006413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0243 Gso-Chr16 2786600 2787441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0243 1 145 Eukaryotic Initiation Factors Gene Family AT2G04520 87.586 8.49e-89 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0243 K03236 - gmx:100777129 283.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0540 7 5447423 5448228 Gso16g0243 16 2786600 2787441 GST
Gso19g2123 19 49766485 49767377 Gso16g0243 16 2786600 2787441 PCT
Gso3g2168 3 46911256 46912184 Gso16g0243 16 2786600 2787441 PCT
Gso16g0243 16 2786600 2787441 Gso19g2123 19 49766485 49767377 PCT
Gso16g0243 16 2786600 2787441 Gso3g2168 3 46911256 46912184 PCT