Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0236 ATGGTTTACGTGAAGTCACAGAAATCAAAAGCCTACTTCAAGAGGTATCAAGTCAAGTTCAAGAGAAGAAGAGAGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGAACAAATATAACACCCCGAAATATCGCTTTGTTGTTCGTTTCAGCAACAAAGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGATATTGTTCTTGCTGCAGCATATGCACATGAGCTGCCACGATATGGTCTTGAAGTAGGGCTTACAAATTATGCTGCAGCTTATTGTACTGGTCTCCTGTTGGCCCGAAGAGTCCTCAAAACACTTGAAATGGATGAGGAGTACGAAGGAAATGTTGAGGCTACTGGAGAGGACTATTCAGTGGAACCTGCTGAGAGCAGGAGGCCATTCCGTGCTCTCCTTGATGTTGGTCTTATTAGGACTACAACTGGCAACCGTGTCTTTGGTGCCCTTAAGGGAGCTCTGGATGGGGGTTTGGATATTCCTCATAGTGACAAGAGGTTTGCTGGGTTTGATAAGGAGAAGAAGGAGCTTGATGCTGAGGTGCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGATCTTGGCGGAAGATGAACCTGAGAAATATCAGTCACACTTCAGTGAATACATCAAGCGTGGAATAGAAGCTGATGGTATTGAGGCACTGTACAAGAAGGTTCATGCTGCCATCCGTGCTGATCCTTCTCTCAAGAAATCTGAGAAGCAGCCCCCGAAGGAACACAAGAGGTACAATCTGAAGAAACTCACTTATGAGGAGAGGAAGGCTAAGTTGATTGCTCGTGTGGCGGCTATCAACTCTGCTGCTGATAATGATGAAGATGATGAGTGA 897 0.4482 MVYVKSQKSKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFSNKDIVAQIISASIAGDIVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKTLEMDEEYEGNVEATGEDYSVEPAESRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFDKEKKELDAEVHRKYVFGGHVAAYMKILAEDEPEKYQSHFSEYIKRGIEADGIEALYKKVHAAIRADPSLKKSEKQPPKEHKRYNLKKLTYEERKAKLIARVAAINSAADNDEDDE* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0236 298 Pfam Ribosomal L18 C-terminal region 235 288 IPR025607 -
Gso16g0236 298 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 14 175 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Gso16g0236 298 Hamap 50S ribosomal protein L18 [rplR]. 14 246 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Gso16g0236 298 PANTHER PROTEIN L5, PUTATIVE-RELATED 1 297 - -
Gso16g0236 298 PANTHER RIBOSOMAL PROTEIN L5-RELATED 1 297 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Gso16g0236 298 Gene3D - 1 291 - -
Gso16g0236 298 PRINTS Ribosomal protein L5 signature 20 39 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Gso16g0236 298 PRINTS Ribosomal protein L5 signature 43 62 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Gso16g0236 298 PRINTS Ribosomal protein L5 signature 84 104 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Gso16g0236 298 PRINTS Ribosomal protein L5 signature 144 163 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Gso16g0236 298 PRINTS Ribosomal protein L5 signature 164 183 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Gso16g0236 298 PRINTS Ribosomal protein L5 signature 206 226 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Gso16g0236 298 CDD Ribosomal_L18_L5e 41 170 - -
Gso16g0236 298 SUPERFAMILY Translational machinery components 11 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0236 Gso-Chr16 2743766 2746153 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0236 1 291 Cytoplasmic Ribosomal Protein Gene Family AT5G39740 83.505 0.0 511
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0236 K02932 - gmx:100805868 584.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0531 7 5387171 5389905 Gso16g0236 16 2743766 2746153 GST