Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0229 ATGAGCACTCAGTTACAACAACACAACAAAAGAGAATTCAAGGGAGAAGAAGAAGAAGAGGAGGAGGAAGAAGAAAACCATTTGCTACATTCAGAATGCGAAACAATACCATTGTCCTCACCCCACACATCACCCTCAGAGTGGGAACATGGAAACAGAGAAGAAGAAGAAGAAGAAGAAGAGAAGGACACGGTGTATGCAGCCAAGGACAAGGTGCAGATATTCGACCTGGAGTCCGCCAGTGGCGCCAGTGTGGGGTCAACGGCGGTGCCGCCATTCTCGTGGAGGAAGCTGTGGCTGTTCACCGGACCCGGGTTGTTGATGAGCGTGGCATTTTTGGACCCGGGGAACCTTGAAGGGGACCTTCAGGCTGGAGCCATTGCAGGGTACTCTTTGCTTTGGTTGTTGATGTGGTCAACCTTCATGGGGCTGGTGATACAGCTTCTGTCGGCAAGGCTCGGGGTGGCGACCGGGCGGCACCTGGCGGAGCTGTGCCGGGAGGAGTACTCCAATTGGGCCAGGTTGGTGCTGTGGATCTTGGCTGAGCTTGCTCTCATTGCTGCTGATATTCAAGAGGTTATTGGCAGTGCTATTGCTCTCAAGATTCTTAGCCATGGGATTCTCCCCATTTGGGCTGGTGTGATCATCACAGCCATGGATTGTTTCTTCTTTCTATTTCTCGAGAACTATGGAGTGAGGAAATTAGAAGGTGTATTCGCAGTTTTCATTGGAACTATGGGCTTTTCTTTTGCGTGGATGTTCTTCGATACAAATCCCAGTGAAGAAGAACTACTGATGGGCCTTTTGATCCCAAGAGTAAATTCGAAAACGCTTCGTCAGGCTGTGGAAATTGTGGGGTGTGTGATAACCCCACACAATGTATTCCTCCATTCTGCATTAGTACAATCAAGGGACATTGATATCCGTAACAAAGGCCAGGTTCAAGAGGCTATAAACTACTACTCAATTGAGTCATCAGTTGCACTTTTAGTAACATTGGTGATCAATCTGTTTGTGATAACCGTTTTCGCTAGGGTGTTCTACGGTACAGAACAGGCGAAAGGCATAGGATTGGTAAATGCAGGGCAGTATCTTCAGGAGAGGTATGGAGGAGGGTTGTTTCCAATTCTCTATATATGGGGTATTGGTTTGTTAGCAGCTGGACAAAGTAGTACCATCACAGGCACATATGCAGGGCAGTTTATAACTGAGGGCTTTCTTAAGCTCAATATAAAGAAGTGGTTGAGGGCATTGATCACTAGAAGTTGTGCAATTGTTCCAACTATGATTTGTGCAATTGTTTTTAATACATCAGAAGGTTCTTTGGATACCATGAATGAATGGCTTAATGTGGTCCAAGCAATACAGATTCCTTTTGCACTTATCCCCCTTCTTACTTTGGTGTCCAAAGAGGAGGTCATGGGGACCTTCAGAATAGGGCCTATAGTAGAGAGAGTGGCTTGGAGTGTGGCTGTGCTGGTAATATTGGTTTATGGATATATGTTATTAGATTTCTTCCTGGATGAAGTGGATGGAGTGTTGTTTGGTTTTCTAGTCTTCCTTGGTGCTGCAGCATGGATTTCATTTATTATATATCTGGTTCAACATAGTGGTGCCATTTCTTCAATCCTAGTGAGGTCCTCTTATTCCAAAGGCTTTTTCTCTCTTGCTGGCAACTAA 1680 0.4571 MSTQLQQHNKREFKGEEEEEEEEEENHLLHSECETIPLSSPHTSPSEWEHGNREEEEEEEEKDTVYAAKDKVQIFDLESASGASVGSTAVPPFSWRKLWLFTGPGLLMSVAFLDPGNLEGDLQAGAIAGYSLLWLLMWSTFMGLVIQLLSARLGVATGRHLAELCREEYSNWARLVLWILAELALIAADIQEVIGSAIALKILSHGILPIWAGVIITAMDCFFFLFLENYGVRKLEGVFAVFIGTMGFSFAWMFFDTNPSEEELLMGLLIPRVNSKTLRQAVEIVGCVITPHNVFLHSALVQSRDIDIRNKGQVQEAINYYSIESSVALLVTLVINLFVITVFARVFYGTEQAKGIGLVNAGQYLQERYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFITEGFLKLNIKKWLRALITRSCAIVPTMICAIVFNTSEGSLDTMNEWLNVVQAIQIPFALIPLLTLVSKEEVMGTFRIGPIVERVAWSVAVLVILVYGYMLLDFFLDEVDGVLFGFLVFLGAAAWISFIIYLVQHSGAISSILVRSSYSKGFFSLAGN* 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0229 559 PRINTS Natural resistance-associated macrophage protein signature 177 203 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gso16g0229 559 PRINTS Natural resistance-associated macrophage protein signature 207 226 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gso16g0229 559 PRINTS Natural resistance-associated macrophage protein signature 232 253 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gso16g0229 559 PRINTS Natural resistance-associated macrophage protein signature 281 304 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gso16g0229 559 PRINTS Natural resistance-associated macrophage protein signature 388 407 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gso16g0229 559 PRINTS Natural resistance-associated macrophage protein signature 416 433 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gso16g0229 559 PRINTS Natural resistance-associated macrophage protein signature 450 469 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gso16g0229 559 PANTHER METAL TRANSPORTER NRAMP3 PROTEIN 29 559 - -
Gso16g0229 559 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 29 559 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gso16g0229 559 Hamap Divalent metal cation transporter MntH [mntH]. 80 506 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gso16g0229 559 Pfam Natural resistance-associated macrophage protein 119 480 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gso16g0229 559 MobiDBLite consensus disorder prediction 1 65 - -
Gso16g0229 559 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 96 474 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0229 Gso-Chr16 2693448 2697647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0229 52 537 Inorganic Solute Cotransporters AT1G47240 70.659 0.0 734
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0229 K21398 - gmx:100801411 999.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0523 7 5317889 5321607 Gso16g0229 16 2693448 2697647 GST