Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0218 ATGGAAGAGAATATGAAGTGTGAACTAGTTGGTCTCATTGATGAGTTAATGCAAGGGAAGGAGCTAGCAAAGCAGCTTTGTGACCATCTAGTCTCATTATCATCATCATCTTCTCATGAAACAAATGAAGTCCTAATTGAGAAAATACTTTCCACCTATGAGAAAGCACTTGCCATGCTGAATTGCAAGGCTAATGTAGGAGAAAGTAAGGCCAACATTAATGGCAGCATGATGGATTCCCCTTGTTCTTTCACAAATGGTAGCCCCAAAAGTGAGGTCATGGAGCCTGAGATTAAGAACAAAGATGTCTTTAAGAAAAGAAAGACCATGTCAACGTGCACAGAACAAGTGAAGGTGTGCTTGGGAACGGCGCATGAAGGATCTCTGGATGATGGCTATAGTTGGAGAAAATATGGACAGAAGGATATTCTCGGAGCTAAGTTTCCAAGAGGATATTACAGATGCACATATAGAAATGTACAAGGATGTCTGGCCACAAAGCAGGTGCAAAAGTCAGATGAAGACCCAATGATATGTGAAATAACCTACAAAGGAAGACACACATGCACCCAAGCAAGTCACTTAAACAAAACAGTGATACCCCCATCAAAGACAAAGGTGAACTTGTTGGGAGAAAATAAGCACCAAACCCATCAAATTAAGAATCAACCACGGCAAGAGAAAATAGAACAACAACCACCAGAGACATTTTTCACATTTGGATCATCATCAGGTCTTGAAGTTAAAATAGAGGACATCGACCACAAGGAGGGCATATTCCCATCATTTTGCTTTTCTTCTCCATCAATAGTAGGGTCAGAAAATGGGGACGACAACAACAGCAGCATATTCTCATACACCATGATTGAGAACAACTTAATGGAAAGCTTCTCTCCTGCCTTCATATCTCCAACAACTTCAGATATAGAATCAAACACTTTCTGCCACTGGGGGAGCACTGGACTAGGCCAAAGTGTGCAAAGCTCAGGGTCTGATATCACTGATATAGTTTCAGCACCAACTTCAGTCACCAATTCACCAATAATGGACCTTGATTTCTTTTTCGATAAGATCGATTTCGACACAGATTTCCCTTTGAGCACCATGGAACTTTGCACTTAA 1122 0.41 MEENMKCELVGLIDELMQGKELAKQLCDHLVSLSSSSSHETNEVLIEKILSTYEKALAMLNCKANVGESKANINGSMMDSPCSFTNGSPKSEVMEPEIKNKDVFKKRKTMSTCTEQVKVCLGTAHEGSLDDGYSWRKYGQKDILGAKFPRGYYRCTYRNVQGCLATKQVQKSDEDPMICEITYKGRHTCTQASHLNKTVIPPSKTKVNLLGENKHQTHQIKNQPRQEKIEQQPPETFFTFGSSSGLEVKIEDIDHKEGIFPSFCFSSPSIVGSENGDDNNSSIFSYTMIENNLMESFSPAFISPTTSDIESNTFCHWGSTGLGQSVQSSGSDITDIVSAPTSVTNSPIMDLDFFFDKIDFDTDFPLSTMELCT* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0218 373 PANTHER WRKY TRANSCRIPTION FACTOR 46-RELATED 1 370 - -
Gso16g0218 373 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 1 370 IPR044810 GO:0003700
Gso16g0218 373 SUPERFAMILY WRKY DNA-binding domain 127 191 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso16g0218 373 Pfam WRKY DNA -binding domain 130 189 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso16g0218 373 SMART WRKY_cls 129 191 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso16g0218 373 Gene3D WRKY domain 113 192 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso16g0218 373 ProSiteProfiles WRKY domain profile. 124 187 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0218 Gso-Chr16 2548225 2551457 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0218 12 367 WRKY Transcription Factor Family AT2G46400 35.440 1.04e-48 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso16g0218 WRKY 7.6e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0218 - - gmx:100170747 734.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0510 7 5150137 5153078 Gso16g0218 16 2548225 2551457 ECH
Gso1g1913 1 55842036 55843963 Gso16g0218 16 2548225 2551457 ECH
Gso16g0218 16 2548225 2551457 Gso16g0218 16 2548225 2551457 ECH
Gso7g0510 7 5150137 5153078 Gso16g0218 16 2548225 2551457 GST
Gso19g2141 19 49934076 49936828 Gso16g0218 16 2548225 2551457 PCT
Gso3g2188 3 47074111 47077041 Gso16g0218 16 2548225 2551457 PCT
Gso16g0218 16 2548225 2551457 Gso19g2141 19 49934076 49936828 PCT
Gso16g0218 16 2548225 2551457 Gso3g2188 3 47074111 47077041 PCT