Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0208 ATGACTGCAAAGGAAAAGAAATTTGTGAGGTTGGATTGGAAGTCACTTTCTTCTTCAAGTATTGAGCACAATGATTCTTCTAATGATGGATTTCTCAAAAGAAAAGTTCGACCAAGCTTAAGTTCTCTCATTGATGGATCAATAACAAATTCGTCTTGTCGGAGCCATGTTCTTGATCCACAGGGGGCAACACTTCAGAAGTGGAACAAAATTTTTGTAATTACAAGTGTGATGGCAGTCTCTGTGGACCCTCTTTTCTTTTACATCCCAATGATTGATGACAAGAAACAATGCCTTGCTTTGGATGGAACACTGAAGATTACTGCCAGTGTTCTCCGCACATTCTTTGATCTTTTCTACATTCTTCACATCATCTTTCAGTTTCGAACCGGGTTTATTGCACCTTCCTCTCGTGTATTTGGAAGGGGTGAGCTAGTTAATGATCCTTGGGCCATAGTAATGAGATACTTAAGCTCTTACTTCATCATTGATATTCTATCAATTATTCCACTTCCTCAGATGGTCATTTTAGCTACGATCTCAATCCCAAAATGCTCAGTTCCTTATGTGGGAAAGGATTTATTGAAGTACACAATAATAACCCAGTACGTGCCAAGACTTCTGCGGATTTACCCGTTATTCAAAGAAGTAACAAGAACTTCTGGCATATTGACTGAGACAGCATGGGCTGGAGCTGCTTTCAATCTTTTTCTGTATATGCTAGCAAGTCATGTTGTTGGAGCATTCTGGTATCTATTTTCGGTTGAATCAAGGTTGCGGTGCTGGCGAAGGCAGTTGAAGACTACTATGATCTTTCATGAATCCTACCTTAGCTGTGGACGTAACAATCCCATTGTTCTATCGCTTCTCAAATATTCTTGCCCTTACACTGATCCAGAAAGCATAGAAAACCTGGCAACTTTCAATTTTGGAATGTTTGTAGAGGCTCTAAAGTCTCGCGTGGTGGAATCAACTACAGATTTTACTCACAAGTTCTTCTATTGCTTTTGGTGGGGTTTGCGCAGTGTAAGTTCTGTTGGGCAAGGTCTCGAGACAAGTAGTTATGTTGGGGAGATAATCTTTGCTATCTTAATTGCTGTCTTTGGATTGGTTCTATTTGCATCACTTATTGCAAACATGCAGAAATATCTACAATCTACCAGTGTGAGAGTTGAAGAGATGAGAGTCAAAAGGAGGGATGCAGAACTGTGGATGTCCCACCGTATGCTACCAGATTTGCTGAAGGAAAGAATTAGAAGGTATGAGCAATACAAATGGCAAGAAAATAAGGGTGCTGAAGAGGAGACATTGATTCGCAACCTCCCTAAAGATCTCAGAAGGGATATCAAGCGTCATCTTTGCTTAGAACTACTTAGAAAAGTACCAATGTTTGAGGACATGGATAATCAGTTGTTGGATGCACTGTGTGACAGACTGAAGCCAGTTCTTTACACAGAGAAAAGTTACATAGTTCGTGAAGGGGATCCAGTTGATGAAATGCTGTTCATAATGCGGGGAAAACTAGCTACTGCCACAACAAATGGTGGAAGAACTGGTTTCTTCAACTCCTTTGAGATCAAGGCTGGTGACTTCTGTGGAGAAGAGCTTCTAACATGGGCATTGGACCCCAACTCATCCTCAAATCTACCCATTTCAACTAGAACTGTGCAAACTATATCAACAGTTGAAGCCTTTGCTCTCATGTCTGATGACTTGATGTTTGTTGCTTCCCAATTTCGACGGCTTTTAAACAGCAAACAACTTCAGCACACTTTCAGGTTCTATTCCCTGCAATGGAGGACATGGGCTGCACGCTTCTTACAAGCAGCTTGGCGCAGATACCGAAAAAGGAAGGAGAGCACGACACATCGTTCATTCACTGATCTCTCGTACAGGTTCTATTCCCCGCGATGGAGGAAATGGGCAGCATGTTTCATTCAAGCATCTTGGCGCAGATACAAGAAAAAGTAG 1971 0.415 MTAKEKKFVRLDWKSLSSSSIEHNDSSNDGFLKRKVRPSLSSLIDGSITNSSCRSHVLDPQGATLQKWNKIFVITSVMAVSVDPLFFYIPMIDDKKQCLALDGTLKITASVLRTFFDLFYILHIIFQFRTGFIAPSSRVFGRGELVNDPWAIVMRYLSSYFIIDILSIIPLPQMVILATISIPKCSVPYVGKDLLKYTIITQYVPRLLRIYPLFKEVTRTSGILTETAWAGAAFNLFLYMLASHVVGAFWYLFSVESRLRCWRRQLKTTMIFHESYLSCGRNNPIVLSLLKYSCPYTDPESIENLATFNFGMFVEALKSRVVESTTDFTHKFFYCFWWGLRSVSSVGQGLETSSYVGEIIFAILIAVFGLVLFASLIANMQKYLQSTSVRVEEMRVKRRDAELWMSHRMLPDLLKERIRRYEQYKWQENKGAEEETLIRNLPKDLRRDIKRHLCLELLRKVPMFEDMDNQLLDALCDRLKPVLYTEKSYIVREGDPVDEMLFIMRGKLATATTNGGRTGFFNSFEIKAGDFCGEELLTWALDPNSSSNLPISTRTVQTISTVEAFALMSDDLMFVASQFRRLLNSKQLQHTFRFYSLQWRTWAARFLQAAWRRYRKRKESTTHRSFTDLSYRFYSPRWRKWAACFIQASWRRYKKK* 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0208 656 Pfam Ion transport protein 68 391 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Gso16g0208 656 SUPERFAMILY cAMP-binding domain-like 392 581 IPR018490 -
Gso16g0208 656 CDD CAP_ED 463 595 IPR000595 -
Gso16g0208 656 Gene3D Jelly Rolls 461 581 IPR014710 -
Gso16g0208 656 Gene3D - 71 387 - -
Gso16g0208 656 SUPERFAMILY Voltage-gated potassium channels 59 385 - -
Gso16g0208 656 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 8 627 - -
Gso16g0208 656 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 630 656 - -
Gso16g0208 656 SMART cnmp_10 463 594 IPR000595 -
Gso16g0208 656 Gene3D Helix hairpin bin 390 454 - -
Gso16g0208 656 ProSiteProfiles cAMP/cGMP binding motif profile. 463 547 IPR000595 -
Gso16g0208 656 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 630 656 - -
Gso16g0208 656 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 8 627 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0208 Gso-Chr16 2431019 2438639 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0208 30 633 Ion Channels AT4G01010 62.660 0.0 809
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0208 K05391 - gmx:100798945 1308.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g2146 19 49974531 49987252 Gso16g0208 16 2431019 2438639 PCT
Gso3g2191 3 47094677 47099201 Gso16g0208 16 2431019 2438639 PCT
Gso16g0208 16 2431019 2438639 Gso19g2146 19 49974531 49987252 PCT
Gso16g0208 16 2431019 2438639 Gso3g2191 3 47094677 47099201 PCT