Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0206 ATGGGCATCTTAGAAGTCCTTTTTCCCTTCTTCGTCTTTCCTGTCATATATGCTGCCTCAAATGATTGCCAATTTTCTCTCTGTGGCAACAATAGTATCCTTATTCGTTTCCCCTTTCAACTAGAAGGTGATCGAAATCCTTATTGTGGCTATCCTGGTTTCAACTTAACTTGTACGAATAGTAGCAAAACAGTGCTAAAATTTCCATACTCTCGTGGCGCATTCTATGTGCGCAGCATCAACTACCTCACACAAAAGATACAAGTCTACGACCCTGATGATTGCCTACCCAAACGTCTTCTGAGCCTCAATATCTCAGGTTCTCCTTTTATCCCCACTTTTACTCGTGACTACACCTTCTTAAGCTGTCCATTTCAGAACGCAGGGTCACAATTCATTCCCATAGACTGCCTCAGTAATTCCACAAGTTTTGTATCAGCTATCCCTACACTGAGCTTGATCAATCCATTGAATGAGTCTTGCTATGTTATTACAAGGGTTTCAGTCCCAGTTTCAGGGCCAGAGCAGCAGTATGAGAAGAATTTCAGAGATGAGCTTATTGAAGATCTTCGATTAACGTGGGATACACCTGACTGCAAATATTGCGAATCGCGACAGCAATTGTGTGGGTTTGATCCAAATAACAACGGTCAACTCTTCTGCTTCTCTGGTTACCAAACAGGTACTTCAAGACGTGGAACCCAAGTTTTCAGAATCATCACACTGTGCATAGCTGGACCAGCAGCGGTCTTTGCAATTGTGATGGCATGTTGTGTGTGCTACAAGGACAGACTAGCCAACATTCGTAACAGTGCCATTACAAGGTCTGCACCTGCAGCTACAATATCGCCGGAGCCACAAATCACGACCACGGGTCTGGACGAGTCCACCATCGAGTCTTACGAGAAGGTGGTGCTCGGAGAGAGTCGACGAGTTCCGGGACCCAACAACAATGGATGCTGTTGGATATGCTTGTCGGAGTACAACAGCAAAGAGACCATAAGACTGATTCCTGAATGCAAACACTGCTTCCATGCAGACTGCATAGACGAGTGGCTTCGAATAAACACCACATGCCCAGTTTGCCGCAACTCTCCCTCCCCTTCTCCTATTCATGTTACGTCCATTGACCCTTAA 1137 0.4529 MGILEVLFPFFVFPVIYAASNDCQFSLCGNNSILIRFPFQLEGDRNPYCGYPGFNLTCTNSSKTVLKFPYSRGAFYVRSINYLTQKIQVYDPDDCLPKRLLSLNISGSPFIPTFTRDYTFLSCPFQNAGSQFIPIDCLSNSTSFVSAIPTLSLINPLNESCYVITRVSVPVSGPEQQYEKNFRDELIEDLRLTWDTPDCKYCESRQQLCGFDPNNNGQLFCFSGYQTGTSRRGTQVFRIITLCIAGPAAVFAIVMACCVCYKDRLANIRNSAITRSAPAATISPEPQITTTGLDESTIESYEKVVLGESRRVPGPNNNGCCWICLSEYNSKETIRLIPECKHCFHADCIDEWLRINTTCPVCRNSPSPSPIHVTSIDP* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0206 378 Pfam Wall-associated receptor kinase C-terminal 155 222 IPR032872 -
Gso16g0206 378 SUPERFAMILY RING/U-box 315 366 - -
Gso16g0206 378 SMART ring_2 321 362 IPR001841 -
Gso16g0206 378 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 4 373 - -
Gso16g0206 378 PANTHER RING-H2 FINGER PROTEIN ATL21A-RELATED 4 373 - -
Gso16g0206 378 SMART ringv_2 320 363 IPR011016 GO:0008270
Gso16g0206 378 Pfam Wall-associated receptor kinase galacturonan-binding 23 91 IPR025287 GO:0030247
Gso16g0206 378 Pfam Ring finger domain 321 363 IPR001841 -
Gso16g0206 378 CDD RING-H2_EL5_like 321 363 - -
Gso16g0206 378 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 282 368 IPR013083 -
Gso16g0206 378 ProSiteProfiles Zinc finger RING-type profile. 321 363 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0206 Gso-Chr16 2398568 2401269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0206 23 369 C3H Transcription Factor Family AT2G46495 43.553 6.87e-89 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0206 - - gmx:100798415 788.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0498 7 5017959 5020956 Gso16g0206 16 2398568 2401269 GST
Gso19g2149 19 49993198 49995522 Gso16g0206 16 2398568 2401269 PCT
Gso16g0206 16 2398568 2401269 Gso19g2149 19 49993198 49995522 PCT