Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gso16g0204 | ATGATAGTGAAGCGGACGATGAAAACCGAAGCGTCGAACCTGAAACGTTGTGAGATTGAGGATTCCGAGAATGCGATTCGGAAGAAGCGTAGGGTGACCGGTTTTTACTCGCTGGGAGTGCCAGGGGATGCTGAATATTTCAGCAGCGGTTCTGGCTCATTGAGCAGCGAAGGTTCGTATTGGGGTGGTGGTGGTGAGGTTCAGTCCAATTCGAATTCCGTTCCGTTTAACCGGAAAATGGCGAAGGAGTCGCGCCTGCCACCATTGCTCCGGTCCTCGCGTGGTCATGCCCAGAAGATTCCGTCGAGGTGCAATGGCTCGGTCCTTGACGCCGCGGATGGAGACTCGAGCTTTGAAGATAATGGTAAGAGTTTTGTGGAGGATGGAAAGGGTGGCATTAGTGTGAAAGTGGAGAAGAGTGATAGTGTGTGTTATTCGTCGAGTGTGGGTAAAAGGACTGTTGTTAAGGCTGAGAGTAATACTTCTGGGATTAGTTTTGAGGGTGTGGACCAAAAGCCTATCGGTGAGAAGAGGAGAGAGGTTTACAAGCCGGAGGATTTTGCTTTGGGGGATATCGTTTGGGCTAAGTGTGGGAAGAGGTACCCGGCTTGGCCTGCTGTGGTGATCGATCCTGTCTTGGAGGCTCCGGAGTCCGTGCTCCGCTGTTGCGTTCCCGGTGCGCTTTGCGTGATGTTTTTCGGTTATTCAAAGAATGGAACCCAAAGGGACTACGCGTGGGTGAAGCAGGGAATGGTGTTCCCCTTCTCGGAGTTCATGGACAGGTTTCAGGGGCAGACCCGGTTGTACAAGAGCAAACCGAGTGACTTCCGCATGGCACTGGAGGAGGCAATGCTGGCAGAAGATGGTGTTCTGGAATCACATTTGGGAAGAAGAGAAGAAGTAACTCATGCAAATGCTCATCCTGATGGACTTATGGAGGCCACTGGTTCTTATGTTGATGAGGAATGCTACGGCCAGGATCAGGATACAAGGTATTGTGCTGGATGTGGTCTGATGTTTCCATGCAAAACCATGAAGAAAATTAAGGATTCAAATTGTGCACCCCGATTTTATTGCAAACATTGTTCTAAGTTACGAAAATCAAAACAATATTGTGGCATTTGCAAAAGGATTTGGCATCATTCAGATGGTGGGAATTGGGTGTGTTGTGATGGGTGTAATGTGTGGGTGCATGCTGAGTGTGATAAAATATCCAGCAAACTTTTCAAGGATCTGGAAAATACAGATTACTATTGTCCAGATTGCAAGGGAAAATTCAATTGTAAATTACCAGCATCACAAACATACAAGTCAAATATCGAATCAATAGAGAATACCCAAAAATCTATAATTCCCGAGAAAGTATTGGTGGTGTGCAATGGAATGGACGGATTTTACATCCCAAAGCTTCATCTAGTCATGTGCAAGTGTGGCTCTTGTGGTACAAGAAAGCAGACACTTAGTGAATGGGAAAAACATACAGGTTGCAGAGCGAAAAAATGGAAACATAGTGTGAAAGTGAAAAGTACAATGCTACCACTGGAAAAATGGATGGCAGAAAACATTCCACTTGATGGAATACCTGAGCAGTTAGATCAACAGCAGGTGCTGGCCTTTTTACAAGAGAAGTATGAGCCTGTTAATGTAAAATGGACAACAGAAAGATGTGCTGTTTGCAGATGGGTTGAAGATTGGGAAGATAACAAAATTATTATTTGTAACAGATGCCAAATAGCAGTCCACCAAGAATGCTATGGGGCAAAGAAAGTTCAGGATTTTACTTCTTGGGTTTGTAGAGTATGTGAAACTCCTGATGTTGAGAGAGAGTGTTGCCTCTGCCCAGTAAAAGGCGGTGCTCTAAAGCCAACTGATGTTGAAATGTTGTGGGTTCATGTAACATGTGCTTGGTTTCGACCTCAAGTTGTTTTCCAAAATCATGAGGCCATGGAACCTGCCACGGGAATCCTTAAAATTCCTCCTAATTCCTTTGTGAAGACTTGTGTGATCTGTGAACAGAGCCATGGTTCCTGCATAGCTTGTTGCAAGTGTTCTACTTATTTTCATGTGATGTGTGCATCAAGGGCAGGATATACAATGGAGTTGCATTCCATGGAGAAGAATGGGACTCAAATAACAAAGAAGCTAATATATTGTGCAATTCACAGGGTCCCAAATCCAGATTCTGTACTGGTGGTACACACCCCCCTTGGGATTTTCTCTCCCAGAACTTCACTTCAAAATCAGAAGGGATGCTTCAGGGGATCAAGGCTAATTTCATCAAAGAATATAGAGCTTAATGAATCTTCAACCACTGAAAAGGACATAGTGGAGCCGCTGTCTGCAGCCAGGTGTCGTGTGTACCAAAGGTCTCCTAATAAGAGGGCTGATGTGCCAATAATTCACTTGCTGAGGGGACCCAGCCTTCATTCTTTAGGTGCAATAACTCAGTTGAACCACTTTAAGGATGCTGATGAATCTAAAGTATTCACTTCTTTCAAGGAACGTCTTCACCATTTATGGGAGATGGAAAAATTTAGAGTTTGCTTTGGAAAATCGGGCATTCATGGATGGGGTCTCTTTGCTCGTAGAGATATACAAGAAGGAGAGATGGTTGTTGAGTATCGTGGTGTGCATGTAAGGCGTAGTGTTACTGATCTGAGGGAAGAAAAATACCGTTCAGAAGGCAAAGATTGCTATTTGTTCAAGATCAGTGAGGAAGTGGTAGTTGATGCAACAAACAGCGGCAATATAGCACGTTTAATAAACCATTCTTGCATGCCAAACTGCTATGCAAGGATTATGAGTATGGGTGATCAGGGGAGCCGGATTGTTCTTATTGCCAAGACCAATGTTTCTGCTGGTGAAGAACTAACGTATGATTACTTGTTTGATCCAGATGAGCGGGATGAATTGAAAGTTCCTTGCCTTTGCAAAGCCCCTAATTGTAGGAGATTTATGAATTAG | 2964 | 0.444 | MIVKRTMKTEASNLKRCEIEDSENAIRKKRRVTGFYSLGVPGDAEYFSSGSGSLSSEGSYWGGGGEVQSNSNSVPFNRKMAKESRLPPLLRSSRGHAQKIPSRCNGSVLDAADGDSSFEDNGKSFVEDGKGGISVKVEKSDSVCYSSSVGKRTVVKAESNTSGISFEGVDQKPIGEKRREVYKPEDFALGDIVWAKCGKRYPAWPAVVIDPVLEAPESVLRCCVPGALCVMFFGYSKNGTQRDYAWVKQGMVFPFSEFMDRFQGQTRLYKSKPSDFRMALEEAMLAEDGVLESHLGRREEVTHANAHPDGLMEATGSYVDEECYGQDQDTRYCAGCGLMFPCKTMKKIKDSNCAPRFYCKHCSKLRKSKQYCGICKRIWHHSDGGNWVCCDGCNVWVHAECDKISSKLFKDLENTDYYCPDCKGKFNCKLPASQTYKSNIESIENTQKSIIPEKVLVVCNGMDGFYIPKLHLVMCKCGSCGTRKQTLSEWEKHTGCRAKKWKHSVKVKSTMLPLEKWMAENIPLDGIPEQLDQQQVLAFLQEKYEPVNVKWTTERCAVCRWVEDWEDNKIIICNRCQIAVHQECYGAKKVQDFTSWVCRVCETPDVERECCLCPVKGGALKPTDVEMLWVHVTCAWFRPQVVFQNHEAMEPATGILKIPPNSFVKTCVICEQSHGSCIACCKCSTYFHVMCASRAGYTMELHSMEKNGTQITKKLIYCAIHRVPNPDSVLVVHTPLGIFSPRTSLQNQKGCFRGSRLISSKNIELNESSTTEKDIVEPLSAARCRVYQRSPNKRADVPIIHLLRGPSLHSLGAITQLNHFKDADESKVFTSFKERLHHLWEMEKFRVCFGKSGIHGWGLFARRDIQEGEMVVEYRGVHVRRSVTDLREEKYRSEGKDCYLFKISEEVVVDATNSGNIARLINHSCMPNCYARIMSMGDQGSRIVLIAKTNVSAGEELTYDYLFDPDERDELKVPCLCKAPNCRRFMN* | 988 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gso16g0204 | 987 | ProSiteProfiles | Zinc finger PHD-type profile. | 553 | 604 | IPR019787 | - | |
| Gso16g0204 | 987 | CDD | SET_SETD1-like | 834 | 983 | - | - | |
| Gso16g0204 | 987 | PANTHER | HISTONE-LYSINE N-METHYLTRANSFERASE | 1 | 987 | - | - | |
| Gso16g0204 | 987 | ProSitePatterns | Zinc finger PHD-type signature. | 556 | 601 | IPR019786 | - | |
| Gso16g0204 | 987 | Pfam | PHD-finger | 371 | 424 | IPR019787 | - | |
| Gso16g0204 | 987 | Gene3D | - | 177 | 293 | - | - | |
| Gso16g0204 | 987 | SUPERFAMILY | SET domain | 841 | 983 | IPR046341 | - | |
| Gso16g0204 | 987 | SMART | PHD_3 | 666 | 722 | IPR001965 | - | |
| Gso16g0204 | 987 | SMART | PHD_3 | 371 | 423 | IPR001965 | - | |
| Gso16g0204 | 987 | SMART | PHD_3 | 555 | 602 | IPR001965 | - | |
| Gso16g0204 | 987 | Pfam | SET domain | 856 | 961 | IPR001214 | GO:0005515 | |
| Gso16g0204 | 987 | ProSiteProfiles | Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. | 3 | 987 | IPR025780 | - | |
| Gso16g0204 | 987 | ProSiteProfiles | Post-SET domain profile. | 971 | 987 | IPR003616 | - | |
| Gso16g0204 | 987 | CDD | PHD_TCF19_like | 372 | 422 | - | - | |
| Gso16g0204 | 987 | ProSiteProfiles | Extended PHD (ePHD) domain profile. | 607 | 722 | IPR034732 | - | |
| Gso16g0204 | 987 | Pfam | PHD-zinc-finger like domain | 609 | 721 | - | - | |
| Gso16g0204 | 987 | SMART | PostSET_3 | 971 | 987 | IPR003616 | - | |
| Gso16g0204 | 987 | SMART | PWWP_4 | 187 | 256 | IPR000313 | - | |
| Gso16g0204 | 987 | Gene3D | SET domain | 821 | 987 | IPR046341 | - | |
| Gso16g0204 | 987 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 605 | 723 | IPR013083 | - | |
| Gso16g0204 | 987 | PANTHER | PHD FINGER PROTEINS | 1 | 987 | - | - | |
| Gso16g0204 | 987 | CDD | PHD_ATX3_4_5_like | 555 | 601 | IPR042011 | - | |
| Gso16g0204 | 987 | SUPERFAMILY | Tudor/PWWP/MBT | 180 | 292 | - | - | |
| Gso16g0204 | 987 | ProSiteProfiles | PWWP domain profile. | 189 | 258 | IPR000313 | - | |
| Gso16g0204 | 987 | SUPERFAMILY | FYVE/PHD zinc finger | 369 | 430 | IPR011011 | - | |
| Gso16g0204 | 987 | Pfam | PHD-finger | 568 | 602 | - | - | |
| Gso16g0204 | 987 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 551 | 604 | IPR013083 | - | |
| Gso16g0204 | 987 | SUPERFAMILY | FYVE/PHD zinc finger | 553 | 618 | IPR011011 | - | |
| Gso16g0204 | 987 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 364 | 427 | IPR013083 | - | |
| Gso16g0204 | 987 | ProSiteProfiles | SET domain profile. | 845 | 962 | IPR001214 | GO:0005515 | |
| Gso16g0204 | 987 | SMART | set_7 | 845 | 968 | IPR001214 | GO:0005515 | |
| Gso16g0204 | 987 | ProSiteProfiles | Zinc finger PHD-type profile. | 369 | 425 | IPR019787 | - | |
| Gso16g0204 | 987 | Pfam | PWWP domain | 190 | 286 | IPR000313 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gso16g0204 | Gso-Chr16 | 2383826 | 2391723 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gso16g0204 | 328 | 396 | EF-hand Containing Proteins | AT5G28340 | 59.420 | 2.70e-20 | 93.2 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | PHD | Gso16g0204 | zf-HC5HC2H_2 | 4e-29 | CL0390 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gso16g0204 | - | - | gmx:100797346 | 2048.86 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Gso7g0497 | 7 | 5005231 | 5013570 | Gso16g0204 | 16 | 2383826 | 2391723 | GST |