Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0196 ATGAAGATTGAGGTGGGGTTGGGAGGGGTGTGGAATGAGGATGAGAAAGCGACAGTGGTGGAGGTTCTGGGTCGAGAGGCGTTCGATTACTTGGTGGCGAATTCGGTTTCGAACGAGAATCTGTTAATGGCGTTTGGGAGCGGGGAGAATCTGCAGAACAAGCTGTCGGGTCTCGTTGAGCGCCCGAACGCGTCGAACTTCAGTTGGAACTACGCCATCTACTGGCAAATTTCGCAGTCAAAGTATGGCGATTGGATTTTGGGGTGGGGAGATGGGTGTTGTAGGGAGCCAAGGGATGGAGAAGAGGGTGGAGAAGTGAGAATTGTTGATGATGAAAAGGTGCAGAGGATGAGGAAGAGGGTGTTGCAGAAGCTGCACATGACTTTTGGGGGTTCTGATGAGGATATTTATGCTTTTGGGTTGGACCGTGTTACCGACACGGAAATGTTCTTTCTTGTTTCCATGTATTTCTCTTTTCCCCGGGGGCTTGGGGGTCCAGGTAAGTGTTTTGCTTCTGGGAAACATTTGTGGATTTCGGATATGTTCAAATCTGGTTTTGATTACTGTGTGAGGTCTTTCTTGGCCAAATCTGCTGGGATTCAGACTGTTGTTTTGGTGCCTACTGATTTGGGGGTGGTGGAGATGGGGTCTGTGAGGACGGTAGATGAGAGCTTTGAGTTGTTGCAGGCTGTCAAATCTGTGTTTTCTGCACCTTTGGTCCTCCCCAAGGTTAAGCCAACTGCACCATTGGATTTGGTGAGTGAAAAGAGAGATGGGAATGAGAGTGCAAATGCTCTTTTTTGTGGTTTGGCAATTGTGGATAAGAATAAGAATAACAACAGCCACAGTAATAACAGGGTAGAGGGAGTTGGTGTTCCAAAGATTTTTGGGCAGGATTTGAATTGTTCCACTCAATTTAGAGAAAAACTGGCTGTGAGGAAAATGGAGGAGAGGCCATGGCCGTGGGGAGGTCATCCCCCCAACGGAAATAGTATTGGCTTTCCTAATGGTGTTCATGGTTCTAGTTGGGGGGCTGGTGAAGTTGTGAGGCAGCTTGGTCATCCTGAAATTCTTGCTCCTAGGTTGGCCAGCTCTGGAGCTTTGCCGGATGTTGCCAATAGTGCGAAGAATGATTTTGTGCATAACAACTTTCAGCAGCAACAGCTGCCTGTACAGATGCAATTTGATTTCTCAAGAGCCACTTCAAGGGCTTCTGAGAGATCAATCATTGCGGAGTCTGAGATTTCTGATATTAAGGCGTCGTGCAAGGAGGAGAGAATGAGTATTGCCGATGACAGGAGGCCGAGGAAGCGGGGGAGGAAGCCGGCTAATGGAAGGGAGGAACCCCTCAATCATGTGGAGGCTGAGAGGCAAAGGCGGGAGAAGCTGAACCAGCGATTCTATGCACTGCGAGCCGTTGTTCCAAACATCTCTAAGATGGATAAGGCATCGCTGTTGGGAGATGCTATTGCTTACATCAACCAGCTTCAAGCAAAACTCAAGACCATGGAGTTTGAGAGAGAGAGGTTTGGAAGCACTTGTGTGGATGGACCAGTATTGGATGTCAATGCAGAAGTAGAAAAAAATCATCACAACGGAGCTCCTGATATGGACGTGCAAGCTGCACAGGATGGGGTCATTGTAAAGGTGAGCTGTCCTATCGATGTTCATCCTGTTTCAAAAGTCATTCAAACCTTCAAAGAGGCAGAAATTGGTGTTGTTGAATCAAGACTTACTGTTGCAAACGATACTGTTTTCCATACATTTGTAGTTAAATCCGAAGGACCTGATCAAGTAACAAAGGATAAGTTGATTGCATTGTTTTCCAAAGAATCCAACTTCATACAAACACTATGA 1857 0.469 MKIEVGLGGVWNEDEKATVVEVLGREAFDYLVANSVSNENLLMAFGSGENLQNKLSGLVERPNASNFSWNYAIYWQISQSKYGDWILGWGDGCCREPRDGEEGGEVRIVDDEKVQRMRKRVLQKLHMTFGGSDEDIYAFGLDRVTDTEMFFLVSMYFSFPRGLGGPGKCFASGKHLWISDMFKSGFDYCVRSFLAKSAGIQTVVLVPTDLGVVEMGSVRTVDESFELLQAVKSVFSAPLVLPKVKPTAPLDLVSEKRDGNESANALFCGLAIVDKNKNNNSHSNNRVEGVGVPKIFGQDLNCSTQFREKLAVRKMEERPWPWGGHPPNGNSIGFPNGVHGSSWGAGEVVRQLGHPEILAPRLASSGALPDVANSAKNDFVHNNFQQQQLPVQMQFDFSRATSRASERSIIAESEISDIKASCKEERMSIADDRRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINQLQAKLKTMEFERERFGSTCVDGPVLDVNAEVEKNHHNGAPDMDVQAAQDGVIVKVSCPIDVHPVSKVIQTFKEAEIGVVESRLTVANDTVFHTFVVKSEGPDQVTKDKLIALFSKESNFIQTL* 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0196 618 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 446 511 IPR036638 GO:0046983
Gso16g0196 618 SMART finulus 453 502 IPR011598 GO:0046983
Gso16g0196 618 Gene3D - 440 511 IPR036638 GO:0046983
Gso16g0196 618 PANTHER MYC 1 613 IPR045084 GO:0003700|GO:0006355
Gso16g0196 618 CDD bHLH_AtAIB_like 444 509 - -
Gso16g0196 618 Pfam Helix-loop-helix DNA-binding domain 451 497 IPR011598 GO:0046983
Gso16g0196 618 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 51 235 IPR025610 -
Gso16g0196 618 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 447 496 IPR011598 GO:0046983
Gso16g0196 618 MobiDBLite consensus disorder prediction 425 458 - -
Gso16g0196 618 PANTHER ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR 1 613 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0196 Gso-Chr16 2291004 2293761 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0196 10 617 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 50.235 0.0 561
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso16g0196 bHLH-MYC_N 9.2e-53 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0196 - - gmx:100804434 1184.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0490 7 4921053 4923972 Gso16g0196 16 2291004 2293761 GST
Gso19g2158 19 50058209 50060734 Gso16g0196 16 2291004 2293761 PCT
Gso3g2200 3 47172677 47175008 Gso16g0196 16 2291004 2293761 PCT
Gso16g0196 16 2291004 2293761 Gso19g2158 19 50058209 50060734 PCT
Gso16g0196 16 2291004 2293761 Gso3g2200 3 47172677 47175008 PCT