Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0195 ATGGAGCAAGAGCTTCAACGCAACAGTGTCCACGACGACGAAGCCGCCACCACCACGAGCTCCGGCGACAAGCCCGCCACCCCTCGCGGCGGCGGAACCCGACACCCCCTCTTCCGCGGCGTTCGCAAGCGCCGCTGGGGCAAATGGGTCTCCGAAATCCGGGAGCCGAGGAAAAAGTCACGCATATGGCTCGGCTCCTTCCCGGCGCCGGAGATGGCGGCCAAGGCCTACGACGTCGCCGCCTACTGCCTCAAGGGCCGCAAGGCGCAGCTCAACTTCCCCGACGAGGTCCACCGTCTTCCGCTGCTCCCCTCCGCCTGCACCGCCCGCGACATCCAGGCCGCCGCCGCCAAGGCCGCCCACATGATGATAGTCCAGGCCGCCTCTGTCACCGCCGACTCGCCGGAGAAAAGCAGCAGCATTACCTCCGACTGCGGCGACGGTGGCGGTGGAGACGACTTCTGGGGCGAAATTGAGCTGCCAGAGTTGCTCAACGCCAAGTGGTGGGCCTCCGACCACGACGTCACGCCGTGGCCCGAGTCCGAGCTCCCGCCCCAGCAGCCCTTCACCACGGCGTGCTTGTAG 585 0.6769 MEQELQRNSVHDDEAATTTSSGDKPATPRGGGTRHPLFRGVRKRRWGKWVSEIREPRKKSRIWLGSFPAPEMAAKAYDVAAYCLKGRKAQLNFPDEVHRLPLLPSACTARDIQAAAAKAAHMMIVQAASVTADSPEKSSSITSDCGDGGGGDDFWGEIELPELLNAKWWASDHDVTPWPESELPPQQPFTTACL* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0195 194 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 2 194 - -
Gso16g0195 194 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 2 194 - -
Gso16g0195 194 SUPERFAMILY DNA-binding domain 37 96 IPR016177 GO:0003677
Gso16g0195 194 CDD AP2 36 95 IPR001471 GO:0003700|GO:0006355
Gso16g0195 194 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Gso16g0195 194 PRINTS Ethylene responsive element binding protein signature 76 96 IPR001471 GO:0003700|GO:0006355
Gso16g0195 194 Gene3D AP2/ERF domain 37 95 IPR036955 GO:0003700|GO:0006355
Gso16g0195 194 Pfam AP2 domain 36 86 IPR001471 GO:0003700|GO:0006355
Gso16g0195 194 MobiDBLite consensus disorder prediction 12 26 - -
Gso16g0195 194 MobiDBLite consensus disorder prediction 1 39 - -
Gso16g0195 194 ProSiteProfiles AP2/ERF domain profile. 37 94 IPR001471 GO:0003700|GO:0006355
Gso16g0195 194 SMART rav1_2 37 100 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0195 Gso-Chr16 2270653 2271526 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0195 33 164 AP2-EREBP Transcription Factor Family AT1G01250 65.152 5.96e-49 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso16g0195 AP2 8.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0195 K09286 - gmx:100802845 377.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0489 7 4894295 4895147 Gso16g0195 16 2270653 2271526 GST
Gso19g2159 19 50073864 50074561 Gso16g0195 16 2270653 2271526 PCT
Gso3g2201 3 47185077 47185831 Gso16g0195 16 2270653 2271526 PCT
Gso16g0195 16 2270653 2271526 Gso19g2159 19 50073864 50074561 PCT
Gso16g0195 16 2270653 2271526 Gso3g2201 3 47185077 47185831 PCT