Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0193 ATGGCACATCTGGGGTGTTGTAATCTTGGGGGCCCTGGGAGTAGTGGAACTTCTCTACCGGAAAAAGGTTTGAAGGATGATGATCTCTATAGAGAGCTATGGAAGCTGTGTGCAGGGCCATTGGTGGATGTTCCTCGTACTGGAGACAGAGTTTTCTACTTCCCTCAGGGTCACATGGAACAATTGCAAGCATCTACGGATCAGGAATTGAACCAGGAAATTCCCCATTTCAATCTCCCGGCCAAGATTTTTTGCCGTGTTGTGAACATTCAGTTGTTGGCGGAACAAGACACTGATGAGGTTTATGCTTGCATCGCTTTGCTTCCAGAATCAGATCAAACTGAGCCTACAAATCCTGATCCAAATATTTCTGAGCCCCCAAAACAGAAGTTTCACTCATTTTGCAAGATATTAACTGCCTCTGATACTAGCACACATGGAGGATTTTCAGTTTTGCGGAAGCATGCTACTGAGTGCCTGCCTGCATTGGACATGACTCAAGCAACCCCTACTCAGGAGTTGGCAGCAAAGGATCTTCATGGATTTGAGTGGAAGTTTAAGCATATATATAGGGGTCAACCAAGGAGGCACTTACTTACAACTGGCTGGAGTACATTTGTTGCATCTAAAAGATTGGTTGCTGGAGATGCTTTTGTGTTTTTAAGGGGAGAGCATGGGCAATTGAGAGTTGGAGTTAGACGTTTAGCGCGGCAGCAGAGTCCTATGCCTTCATCTGTGATATCAAGCCAGAGCATGCATCTTGGAGTGCTTGCCACTGCTTCCCATGCTGTCATGACTCGTACCATGTTTTTGGTTTATTACAAGCCAAGGACTAGCCAGTTTATTGTTGGTTTGAACAAATATCTAGAGGCAGTCAACAATAAGTTTTCACTCGGCATGCGATTCAAGATGAGATTCGAGGGAGATGACTCACCTGAGAGAAGGTTTTCAGGTACTATTGTTGGGGTTGGAGACGTGTCTGCAGGATGGTCAAATTCACAGTGGCGCTCATTGAAGGTTCAATGGGATGAACCAGCAACAATTCCAAGGCCAGATAGGGTTTCTTGCTGGGAGATAGAGCCTTTTGTAGCTTCTACTGCTTTGAATGTCACACAACCAGCAGTGAAGGGTAAAAGGTCTAGGCCTGCTGATGTATCGTCTTCTGGTTTCTGGTATCATGGTTCTTCCAATGAGCTTAGTCAATTAGGTGCTGCCACTGCTGAAGTCCAAAGCAAGGAAAATCAGGTTGTTCCATGTTCTCTGAGGCAGAAAGACATTATTAATAGCAATCCAATTGATGCTAATAACTCTAGCATCAGCTCTAGAGTCCGGATGGAAGGAGTATGGCCTTCTTCACCACATTTGAATGTCACTCCAAACCTTTTTTCTGATCCCAATAACAACAGTGTTTTGGCACGATCACCGATCTCTGGTTATCTTAATGTTCCATCTAGATCAAGTGATGGTCCCACATGTGAGCATGTGGAAGACGGGAAAAAGATTGAGAATTCCCTTGATTGCTGGTTATTTGGAGTTAATTTGACTAACAATTGTAGCAATGTTATAATTACTACTCCTTCAGAGAGGGAACTGAGAGGTCCAATAAGCTCAAGTGTTGCTCCTAGTGGTCCCAAAGAATCTATTCCTGCAGCTGCATGTGAAACTGAGAGGGTTCAGACTCCCAACTATTCACTGTCCAACAAGGGGCAGAAGCAAATTATTTCTGAGGCATCACCAAATGAGTGGCAGAACAAGCAGGCCACTGTACCATCCATGAGGACGCGGACTAAGGTGCAAATGCAAGGTGTTGCTGTTGGTCGTGCGTTTGACTTGACCACATTGAGTGGCTATGATGATCTCATAGAAGAACTCGAGAAATTGTTTGAGATCAGAGGAGAGTTGCATTCACAAGACAAATGGGCTGTTACTTTCACGGATGATGAAAATGACATGATGCTCGTGGGTGATGATCCATGGCCGGAGTTCTGCAACATGGTGAAGAGGATTTTCATTTGTTCACGGGAGGACTTGAAGAAGATGAAATGCTGCAAGCTACCTGCTTCTTCATCAGAGGTTGAAGAGGTTCTATTGAGTCCAGATTCACAGAATAGGGATGAGACTCAACAGTCTCACATGCCTTAG 2142 0.4468 MAHLGCCNLGGPGSSGTSLPEKGLKDDDLYRELWKLCAGPLVDVPRTGDRVFYFPQGHMEQLQASTDQELNQEIPHFNLPAKIFCRVVNIQLLAEQDTDEVYACIALLPESDQTEPTNPDPNISEPPKQKFHSFCKILTASDTSTHGGFSVLRKHATECLPALDMTQATPTQELAAKDLHGFEWKFKHIYRGQPRRHLLTTGWSTFVASKRLVAGDAFVFLRGEHGQLRVGVRRLARQQSPMPSSVISSQSMHLGVLATASHAVMTRTMFLVYYKPRTSQFIVGLNKYLEAVNNKFSLGMRFKMRFEGDDSPERRFSGTIVGVGDVSAGWSNSQWRSLKVQWDEPATIPRPDRVSCWEIEPFVASTALNVTQPAVKGKRSRPADVSSSGFWYHGSSNELSQLGAATAEVQSKENQVVPCSLRQKDIINSNPIDANNSSISSRVRMEGVWPSSPHLNVTPNLFSDPNNNSVLARSPISGYLNVPSRSSDGPTCEHVEDGKKIENSLDCWLFGVNLTNNCSNVIITTPSERELRGPISSSVAPSGPKESIPAAACETERVQTPNYSLSNKGQKQIISEASPNEWQNKQATVPSMRTRTKVQMQGVAVGRAFDLTTLSGYDDLIEELEKLFEIRGELHSQDKWAVTFTDDENDMMLVGDDPWPEFCNMVKRIFICSREDLKKMKCCKLPASSSEVEEVLLSPDSQNRDETQQSHMP* 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0193 713 Pfam Auxin response factor 260 339 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gso16g0193 713 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 19 690 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gso16g0193 713 ProSiteProfiles B3 DNA-binding domain profile. 134 236 IPR003340 GO:0003677
Gso16g0193 713 Gene3D - 295 367 - -
Gso16g0193 713 ProSiteProfiles PB1 domain profile. 593 674 IPR000270 GO:0005515
Gso16g0193 713 MobiDBLite consensus disorder prediction 687 713 - -
Gso16g0193 713 Gene3D - 589 681 - -
Gso16g0193 713 MobiDBLite consensus disorder prediction 694 713 - -
Gso16g0193 713 Pfam AUX/IAA family 585 629 IPR033389 -
Gso16g0193 713 Pfam AUX/IAA family 634 675 IPR033389 -
Gso16g0193 713 Pfam B3 DNA binding domain 134 234 IPR003340 GO:0003677
Gso16g0193 713 SUPERFAMILY DNA-binding pseudobarrel domain 122 263 IPR015300 -
Gso16g0193 713 SMART B3_2 134 236 IPR003340 GO:0003677
Gso16g0193 713 PANTHER AUXIN RESPONSE FACTOR 11 19 690 - -
Gso16g0193 713 Gene3D - 131 235 IPR015300 -
Gso16g0193 713 CDD B3_DNA 132 234 IPR003340 GO:0003677
Gso16g0193 713 SUPERFAMILY CAD & PB1 domains 589 669 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0193 Gso-Chr16 2223331 2228502 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0193 29 680 B3 DNA Binding Superfamily AT4G23980 55.251 0.0 647
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gso16g0193 B3 9.9e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0193 K14486 - gmx:100795763 1428.31