Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0187 ATGGGAAGGGCTCCTTGTTGTTCCAAAGTGGGGTTGCACAAAGGTCCATGGACTCCTAAAGAAGATGCATTGCTTACCAAGTATATCCAAGCTCATGGAGAAGGCCAATGGAAATCACTACCCAAAAAAGCAGGGCTTCTTAGATGTGGAAAAAGTTGTAGATTGAGATGGATGAACTATCTGAGACCAGACATAAAGAGAGGGAACATAGCACCAGAAGAAGATGATCTTATAATCAGAATGCATTCACTTTTGGGAAACAGATGGTCCCTCATAGCAGGAAGGTTACCAGGGAGAACAGACAATGAAATAAAGAACTACTGGAACACCCATCTAAGCAAAAAGCTGAAAATTCAAGGAACAGAAGACACAGACACACACAAAATGTTAGAGAATCCTCAAGAAGAGGCTGCAAGTGATGGTGGCAACAACAACAAAAAGAAGAAGAAGAAGAAGAACGGTGGCAAAAAGAACAAGCAGAAGAACAAAGGCAAAGAAAATGATGAGCCGCCAAAGACACAAGTTTACCTACCAAAACCAATTAGAGTGAAGGCAATGTATTTACAAAGAACGGATAGTAACACCTTCACCTTTGATTCCAATTCAGCTAGTGGATCAACAAGCCAAGAGAAGGAGGAAAGCCCCGTGACAAAAGAATCAAACGTGGTTAGTGAAGTTGGTAATGTGGGAGAAGAAAGTGATGGTTTTGGCTTCTTCAGTGAGGACCATGACTTAGTCAACGTCTCAGATATTGAATGCCACTCTTATTTTCCCACAGATCATGGCAACCTACAGCAATTGTATGAAGAATATTTCCAGCTCTTGAACATGGACCATGGCCAATTCGAACTGAATTCATTTGCAGAATCTTTATTAGATTAA 882 0.4093 MGRAPCCSKVGLHKGPWTPKEDALLTKYIQAHGEGQWKSLPKKAGLLRCGKSCRLRWMNYLRPDIKRGNIAPEEDDLIIRMHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHLSKKLKIQGTEDTDTHKMLENPQEEAASDGGNNNKKKKKKKNGGKKNKQKNKGKENDEPPKTQVYLPKPIRVKAMYLQRTDSNTFTFDSNSASGSTSQEKEESPVTKESNVVSEVGNVGEESDGFGFFSEDHDLVNVSDIECHSYFPTDHGNLQQLYEEYFQLLNMDHGQFELNSFAESLLD* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0187 293 MobiDBLite consensus disorder prediction 145 159 - -
Gso16g0187 293 CDD SANT 72 112 IPR001005 -
Gso16g0187 293 MobiDBLite consensus disorder prediction 195 222 - -
Gso16g0187 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gso16g0187 293 CDD SANT 16 61 IPR001005 -
Gso16g0187 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gso16g0187 293 PANTHER MYB TRANSCRIPTION FACTOR 1 284 - -
Gso16g0187 293 Gene3D - 14 66 - -
Gso16g0187 293 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gso16g0187 293 Gene3D - 70 132 - -
Gso16g0187 293 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gso16g0187 293 MobiDBLite consensus disorder prediction 195 211 - -
Gso16g0187 293 Pfam Myb-like DNA-binding domain 70 112 IPR001005 -
Gso16g0187 293 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gso16g0187 293 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 284 - -
Gso16g0187 293 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gso16g0187 293 SMART sant 13 63 IPR001005 -
Gso16g0187 293 SMART sant 66 114 IPR001005 -
Gso16g0187 293 MobiDBLite consensus disorder prediction 133 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0187 Gso-Chr16 2150013 2151418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0187 1 132 MYB Transcription Factor Family AT5G49330 68.182 7.38e-66 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso16g0187 Myb_DNA-binding 9.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0187 K09422 - gmx:100101857 551.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0480 7 4773735 4775176 Gso16g0187 16 2150013 2151418 GST
Gso19g2166 19 50126613 50129232 Gso16g0187 16 2150013 2151418 PCT
Gso3g2206 3 47223533 47225710 Gso16g0187 16 2150013 2151418 PCT
Gso16g0187 16 2150013 2151418 Gso19g2166 19 50126613 50129232 PCT
Gso16g0187 16 2150013 2151418 Gso3g2206 3 47223533 47225710 PCT