Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0178 ATGATGGTTCTAGATGTGTTATCTGGTCCTACCGGAACGGCCATTTCTCAAACTGTAGATACCATTGCTGACTTCCTAGTTACTGCCAATGATGTCCTTGTGCAAAAGGATAGTTTTAAGGAACTTGCTGCTTACATGGAAAGAATTAAGCCAGTCTTAGAAGAATTGAGGAAAGGAAAAGTCAGTGATTCTGAGAGGTTCAACCGCACCATTGAGATCATGAATAAAGAAATTAAAGATGCAAACCAACTATGTCTAGATTGCAGCAAGAAGAGTAAGTTTTATCTACTAATGAACTGCAGGTCCATAGCTAAGAGCTTAGAAAACCACACAAAACAGCTGAGTAGGGCACTTGGTCTTCTTCCTTTAGCCACAACAGGACTTTCTTCAGGAATAGGTGAAGAAATTGAAAAGCTATGCGAAGATATGAAGACAGCTGGATTTAAGGCAGCTCTAGCTGAAGAAGAGATTTTAGAGAAAATCGAGTCAGGGATAAGGGAAAACAATGTTGACCGTTCCTACGCCAATAAGTTGCTACTTGACATTACTGATGCTGTTGGGATTGGGAATGAGAGGTCAACAATAAAGATAGAACTTGAAGAGTTTAAGAGTGAGATTGAAAATGCGCGTGTTAGGAAGGACTTGGCCGAGGCTATGCAAATGGATCAAATCATTGCTTTGTTGGAAAGGGCTGATGCAGCTTCATCAACTAAGGACAAGGAACTCAAATACTTTGCGAAACGCCAATCTTTGGGTACTCAAATCATGGAGCCTTTGCAGTCATTTTATTGCCCCATCACCCAGGATGTTATGGTGGATCCTGTAGAAATTTCATCAGGGCAGACATTTGAGAGAAGTGCCATAGAAAAGTGGTTTGCTGAAGGAAACAAATTGTGCCCCTTGACCTTGATTCCTTTAGACACATCAATTTTGAGACCTAACAAAAAGTTGAAACAATCCATACAAGAGTGGAAAGATAGAAATATAATGATTACAATTGCCACATTGAAAGAAAAAATCCTATCTGGAAATGATGAAGAAGTGCTGCATGATCTGGAAACTCTTCAGACTTTGTGTGAAGAAAAAAACCAACACAGGGAATGGGTGATTTTAGAGGATTACATACAAACTCTCATCCAAATTTTGTCAAAAAACCGTGATATAAGGAAATTATCTCTTTTCATCCTTGGCATGCTGGCAAAGGACAATGAAGACGCTAAGAAAAGAATTTCAGCCGCTGACCATGCAATTGAATCGATTGTTCGGTCTCTTGGACGTCGTCCTGAGGAAAGGAAGTTAGCAGTGGCGTTACTGCTCGAGTTATCCAAATATGATGCGGCACGAGAACACATTGGAAAAGTTCAAGGTTGCATACTACTATTGGTGACCATGTCTAGTGGAGATGACAATCAAGCTGCTAGAGATGCAACAGAGCTATTGGAGAATCTTTCGTACTCCGCTCAGAATGTTATACAGATGGCAAAAACAAATTACTTCAAGCATTTATTGCAGCATCTCTCCACAGGACCAGATGACGTAAAGATGACTATGGCCACAAATTTAGCCGAAATGGAGTTAACTGACCACAATAGGGAGTCCTTATTTGATGGTGGTGTACTGGTTCCTCTTCTTCACATGTTCTTACATAATGATCTACAGGTGAAAACTGTTGCTATTAAGGCACTTAAGAATTTATCCAGCTCAAAGAAAAATGGACAGGAAATGATAAGACAGGGAGCTGCACGGCCACTACTTAACCTTCTTTTCAATCAAAGCTTACACACCACAGGTTTGTGGGAAGATGTAGCAGCCATAATTATGCAACTTGCTGCATCAACTATCTCTCAGGATTCCCAAACACCTGTTTTATTACTAGATTTTGATGATGATGTTTCCCGTCTCTTCAATTTAGTTAGTGTCCCACAGTCTGCTGTGCAAGTGCAACAAAACATTATCCAGACCTTTTATTCCTTGTGTCAAACACCCTCAGCTTCATTTATCAGAACCAAACTAATAGAGTGCTCAGCGGTTCCAGAATTGGTTCAACTGTGTGAGAATGAAAACCTAAACCTACGAGCAAGTGCTGTAAAGTTGTTTTCTTGCTTGGTAGAGAGTTGTGACGAAGGCATCATACAGGAGCATGTGAATCAGAAATGCATTAATACTCTACTCCAGATCATAAAATCTCCATCTGATGAAGAGGAAATACTTTCTGCCATGGGAATAATATGCTATCTTCCCGAAGTTGACCAGATAACTCAATGGCTTTTGGATGCTGGTGCACTGCCAATCATTAAAACTTACGTCCAAAATGGGGAAAACAGAGATCATCAAAGGAATAACTTAGTAGAGAATGCCATTGGTGCCCTATGTCGTTTTACAGTTCCAACAAACTTGGAATGGCAAAAAAGTGCAGCTGAAACTGGGATCATGACTCTTTTAGTGCAGCTGCTTGAAAATGGAACAAACTTGACAAAGCAACGCGTGGCACAGTCTCTTGCTCAATTTTCTAAAAGCTCATTTAAGCTGAGCCGGCCAATATCAAAGCGCAAAGGACTGTGGTGTTTCTCAGCTCCTGCTGACATTGGCTGCATGGTTCATGAAGGAATATGCTCAGTCAAATCATCATTTTGCCTTTTGGAGGCTAATGCAGTTGGACCACTCACAAGGACTCTTGGGGAACCTGATCCCGGAGTTTGTGAGGCTTCTTTGGACGCTCTATTAACATTAATTGAAGGTGAAAGACTTCAGAGTGGTAGTAAAGTGCTTTCAGAAGCAAATGCCATACCACTAATAATAAGATACCTTGGCTCCACCTCCCCTGGCTTGCAGGAGAAGTCTCTACATGCTTTGGAAAGGATTTTTCGGCTGGTCGAATACAAACAGATGTATGGAGCCTCAGCTCAAATGCCTCTAGTTGACTTAACTCAGAGGGGTAATGGTAGTGTTAGGTCCATGTCAGCTAGAATATTGGCACATTTGAACGTGCTTCACGATCAATCTTCATATTTCTAA 3015 0.4093 MMVLDVLSGPTGTAISQTVDTIADFLVTANDVLVQKDSFKELAAYMERIKPVLEELRKGKVSDSERFNRTIEIMNKEIKDANQLCLDCSKKSKFYLLMNCRSIAKSLENHTKQLSRALGLLPLATTGLSSGIGEEIEKLCEDMKTAGFKAALAEEEILEKIESGIRENNVDRSYANKLLLDITDAVGIGNERSTIKIELEEFKSEIENARVRKDLAEAMQMDQIIALLERADAASSTKDKELKYFAKRQSLGTQIMEPLQSFYCPITQDVMVDPVEISSGQTFERSAIEKWFAEGNKLCPLTLIPLDTSILRPNKKLKQSIQEWKDRNIMITIATLKEKILSGNDEEVLHDLETLQTLCEEKNQHREWVILEDYIQTLIQILSKNRDIRKLSLFILGMLAKDNEDAKKRISAADHAIESIVRSLGRRPEERKLAVALLLELSKYDAAREHIGKVQGCILLLVTMSSGDDNQAARDATELLENLSYSAQNVIQMAKTNYFKHLLQHLSTGPDDVKMTMATNLAEMELTDHNRESLFDGGVLVPLLHMFLHNDLQVKTVAIKALKNLSSSKKNGQEMIRQGAARPLLNLLFNQSLHTTGLWEDVAAIIMQLAASTISQDSQTPVLLLDFDDDVSRLFNLVSVPQSAVQVQQNIIQTFYSLCQTPSASFIRTKLIECSAVPELVQLCENENLNLRASAVKLFSCLVESCDEGIIQEHVNQKCINTLLQIIKSPSDEEEILSAMGIICYLPEVDQITQWLLDAGALPIIKTYVQNGENRDHQRNNLVENAIGALCRFTVPTNLEWQKSAAETGIMTLLVQLLENGTNLTKQRVAQSLAQFSKSSFKLSRPISKRKGLWCFSAPADIGCMVHEGICSVKSSFCLLEANAVGPLTRTLGEPDPGVCEASLDALLTLIEGERLQSGSKVLSEANAIPLIIRYLGSTSPGLQEKSLHALERIFRLVEYKQMYGASAQMPLVDLTQRGNGSVRSMSARILAHLNVLHDQSSYF* 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0178 1004 Gene3D - 869 1002 IPR011989 -
Gso16g0178 1004 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 14 1004 - -
Gso16g0178 1004 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 237 333 IPR013083 -
Gso16g0178 1004 SMART Ubox_2 261 324 IPR003613 GO:0004842|GO:0016567
Gso16g0178 1004 Coils Coil 64 84 - -
Gso16g0178 1004 ProSiteProfiles U-box domain profile. 257 331 IPR003613 GO:0004842|GO:0016567
Gso16g0178 1004 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 14 1004 - -
Gso16g0178 1004 Gene3D - 13 125 IPR036537 GO:0007166
Gso16g0178 1004 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 538 580 IPR000225 GO:0005515
Gso16g0178 1004 SMART arm_5 405 443 IPR000225 GO:0005515
Gso16g0178 1004 SMART arm_5 706 745 IPR000225 GO:0005515
Gso16g0178 1004 SMART arm_5 663 704 IPR000225 GO:0005515
Gso16g0178 1004 SMART arm_5 527 567 IPR000225 GO:0005515
Gso16g0178 1004 SMART arm_5 872 912 IPR000225 GO:0005515
Gso16g0178 1004 SMART arm_5 748 795 IPR000225 GO:0005515
Gso16g0178 1004 SMART arm_5 916 956 IPR000225 GO:0005515
Gso16g0178 1004 SMART arm_5 444 485 IPR000225 GO:0005515
Gso16g0178 1004 SMART arm_5 362 401 IPR000225 GO:0005515
Gso16g0178 1004 SUPERFAMILY RING/U-box 248 328 - -
Gso16g0178 1004 CDD RING-Ubox_PUB 262 302 IPR045210 -
Gso16g0178 1004 Pfam U-box domain 262 327 IPR003613 GO:0004842|GO:0016567
Gso16g0178 1004 Gene3D - 521 853 IPR011989 -
Gso16g0178 1004 SUPERFAMILY ARM repeat 332 994 IPR016024 -
Gso16g0178 1004 Coils Coil 192 219 - -
Gso16g0178 1004 Gene3D - 334 520 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0178 Gso-Chr16 2053110 2060125 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0178 260 1004 U-box Gene Family AT1G76390 28.208 3.07e-62 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0178 - - gmx:100787128 1920.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0472 7 4691010 4697981 Gso16g0178 16 2053110 2060125 GST