Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0170 ATGGAATATAGTCAATATACTACTTATTCAGCAGAAGGTGTTGAGGCAGAAACTTACACAAGTAGCTGCACCACCCCATCAAGATCAAAGAAGAGAAACAACAACAACACAAGAAGGTTCAGTGATGAACAAATCAAATCATTGGAGACCATGTTTGAGTCAGAGACAAGGCTTGAGCCTAGAAAGAAGTTGCAGCTTGCAAGAGAGCTTGGATTGCAGCCAAGGCAAGTTGCTATATGGTTTCAGAACAAGAGGGCTAGATGGAAGTCAAAGCAACTTGAGAGAGACTATGGCATACTCCAATCCAATTATAACACTTTGGCTTCACGTTTTGAAGCTCTGAAGAAGGAAAAACAAACATTACTAATTCAGTTGCAGAAGCTGAATCATCTAATGCAGAAGCCAATGGAGCCAAGTCAGAGATGCACACAAGTTGAAGCAGCAAACAGCATGGACAGTGAATCAGAAAATGGAGGCACCATGAAATGTGAAGCTGAGGGAAAGCCAAGCCCATCATCATTGGAAAGATCAGAACATGTACTTGGTGTTCTGTCTGATGATGACACTAGCATAAAGGTGGAAGACTTTAACCTAGAAGATGAACATGGCCTTCTGAATTTTGTTGAGCATGCTGATGGTTCCTTGACTTCACCAGAAGATTGGAGTGCTTTTGAATCCAATGATCTATTTGGCCAATCAACCACTGATGATTACCAATGGTGGGACTTCTGGTCCTGA 738 0.4187 MEYSQYTTYSAEGVEAETYTSSCTTPSRSKKRNNNNTRRFSDEQIKSLETMFESETRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQLERDYGILQSNYNTLASRFEALKKEKQTLLIQLQKLNHLMQKPMEPSQRCTQVEAANSMDSESENGGTMKCEAEGKPSPSSLERSEHVLGVLSDDDTSIKVEDFNLEDEHGLLNFVEHADGSLTSPEDWSAFESNDLFGQSTTDDYQWWDFWS* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0170 245 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 15 245 IPR045224 GO:0003700
Gso16g0170 245 Gene3D - 18 93 - -
Gso16g0170 245 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-7 15 245 - -
Gso16g0170 245 Pfam Homeobox associated leucine zipper 91 133 IPR003106 GO:0006355|GO:0043565
Gso16g0170 245 PRINTS Lambda-repressor HTH signature 62 71 IPR000047 GO:0003677
Gso16g0170 245 PRINTS Lambda-repressor HTH signature 71 87 IPR000047 GO:0003677
Gso16g0170 245 Coils Coil 111 131 - -
Gso16g0170 245 Pfam Homeodomain 38 89 IPR001356 GO:0003677
Gso16g0170 245 MobiDBLite consensus disorder prediction 1 41 - -
Gso16g0170 245 CDD homeodomain 38 92 IPR001356 GO:0003677
Gso16g0170 245 SUPERFAMILY Homeodomain-like 21 93 IPR009057 -
Gso16g0170 245 MobiDBLite consensus disorder prediction 147 176 - -
Gso16g0170 245 SMART HOX_1 28 95 IPR001356 GO:0003677
Gso16g0170 245 MobiDBLite consensus disorder prediction 1 31 - -
Gso16g0170 245 ProSiteProfiles 'Homeobox' domain profile. 31 91 IPR001356 GO:0003677
Gso16g0170 245 ProSitePatterns 'Homeobox' domain signature. 66 89 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0170 Gso-Chr16 1942016 1943567 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0170 39 245 Homeobox Transcription Factor Family AT3G61890 55.660 2.84e-64 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso16g0170 Homeodomain 2.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0170 K09338 - gmx:100811208 493.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0464 7 4579759 4581066 Gso16g0170 16 1942016 1943567 GST