Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0160 ATGTCTCAACAAAGGCAAACTCAGATGGTGGGTGGTAACAACCCTGACCAATATAATGACACAACTTTCACCAAAATCTTTGTTGGAGGGTTGGCTTGGGAGACTCAGAGGGACACAATGAGAAGGTATTTTGAGCAGTTTGGAGAGATCTTAGAGGCTGTTGTTATCACAGATAAGAATACCGGGAGATCCAAGGGTTATGGCTTTGTCACATTTAAGGATCCTGAGTCAGCCATGAGAGCATGTCAGAATCCATTTCCAGTTATTGATGGTAGGAGAGCAAACTGCAACCTTGCTTCTCTTGGTGCAAGCAAGAATCGACCACCAACTTTTCAGCATGGTGCAGGACGGTTCAGGCCTCCACCTGGACTAGTGACATCCTCACCTGCTTATCATGGTTCTTCATCATCTACATTTTTCCATCAACCCCCTAGGGAATACGCATTTCCTTATTCAGCATACGGATATTCTGGATATTCACAAGACACCTTGTATCCTACGGTAGCTGTTAATAGTTATTATAATGTCTATGGAGTTCAGCAGTTTTCTTCACCTTACTACCCATCTGCTGGAGCTTCTGGGGCACTAGGGTTGATCCACAATATCTACCCCTTTTATGGTCAATATGCACAGAGTATTCAGGCTCCTGGTTTTGGGGTTCAGTACCCCCAAATGGCACAGTTTCCATTTTTGCCTCAGCATTATGGCTCCACTGGGATATTGTCATATCCTTCTTCAGTGGCAGTGGCAACTACTAGTGCAGTAACAGGAATAGCAGCCACAACTACAACTACAACAACGTCAACAAGTGTGGCAGCAACAGTGGCTGGTACTGCTTCACAAGCCTCTCAAGCAGCTTCTGAACAAAATTCCACATCAACAAGGACAAAGAACTTGCAAGGCTAA 906 0.447 MSQQRQTQMVGGNNPDQYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQNPFPVIDGRRANCNLASLGASKNRPPTFQHGAGRFRPPPGLVTSSPAYHGSSSSTFFHQPPREYAFPYSAYGYSGYSQDTLYPTVAVNSYYNVYGVQQFSSPYYPSAGASGALGLIHNIYPFYGQYAQSIQAPGFGVQYPQMAQFPFLPQHYGSTGILSYPSSVAVATTSAVTGIAATTTTTTTSTSVAATVAGTASQASQAASEQNSTSTRTKNLQG* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0160 301 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 83 IPR000504 GO:0003723
Gso16g0160 301 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 101 IPR000504 GO:0003723
Gso16g0160 301 PANTHER - 1 281 - -
Gso16g0160 301 SMART rrm1_1 25 97 IPR000504 GO:0003723
Gso16g0160 301 SUPERFAMILY RNA-binding domain, RBD 11 122 IPR035979 GO:0003676
Gso16g0160 301 Gene3D - 1 116 IPR012677 -
Gso16g0160 301 MobiDBLite consensus disorder prediction 280 301 - -
Gso16g0160 301 CDD RRM_RBM24_RBM38_like 24 99 - -
Gso16g0160 301 PANTHER BOULE-RELATED 1 281 IPR037366 GO:0003729
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0160 Gso-Chr16 1747657 1750662 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0160 20 100 C2H2 Transcription Factor Family AT2G19380 44.444 1.47e-15 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0160 - - gmx:100788899 541.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0455 7 4424064 4427206 Gso16g0160 16 1747657 1750662 GST