Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0159 ATGCCGGAAAACATGAGCATATCAGTGAATGGTCAATCTCAAGTCCCTCCTGGCTTCAGGTTTCATCCAACTGAAGAAGAGCTTCTTCAGTACTACTTGAGGAAGAAGGTCTCTTACGAGAAGATTGACCTCGACGTGATTCGTGACGTTGATCTCAACAAGCTCGAGCCATGGGACATACAAGAGAAATGCAAAATAGGAACCACTCCGCAGAATGATTGGTACTTCTTCAGCCACAAAGACAAGAAGTACCCCACAGGAACGCGCACCAATCGCGCAACTGCTGCAGGGTTCTGGAAGGCCACTGGCCGCGACAAAGTCATCTACAGCAATGGAAAGAGGATTGGAATGAGAAAGACTCTGGTTTTCTACAAAGGAAGAGCGCCACATGGCCAGAAATCCGATTGGATCATGCATGAATACAGACTAGACGACAACAACACCAGCGACACCAATATTGTGTCCAATGTGATGGCGGATGCTGCTCAGGAAGAAGGGTGGGTGGTGTGCAGGATATTCAAGAAGAAGAACCATCTGAAAACCCTAGACAGCCCCATAGCTTCCGGGGAAGGTAGAAGGAGCCACATGTTCGACTCGTGCGACGAGGGAGCTTTGGAGCAAATACTTCAGCAAATGGGAAGGGGCTGCAAGGAGGAGAGCAGCTATGAAGGCAACTACAACAGCTATGGAAGGTTTGCAATGGGGTTGAACAATGGCGGCGGCGGTGGATACAATGATAGGTTCATGAAGCTCCCGAGCCTCGAGAGCCCAAAATCCGCAAGCATGGAGAACCACCACAACACCAACAACAACTGCAACAATAACATGAAGAGTAATAATAATAATAATAATAATAATAACGGGTACCATCCCATAATTCCAGTAGAGATGGGCACGGACAATGAAGGGACATTCACAACGCACCAGGTGAGTGGTGGTGACCCAAACAACAACAACAGCAACATTGTTCATCCATTGGAGGTAGGATCAGGTGGTGGAGGCCTCACCAACTGGGCTGCGCTGGACCGTTTAGTTGCATCTCAACTCAATGGCCAAACCGATGCCTCTAGGCAACTAGGATGTGCTTTCAACGACCCCACCATGTATTGCACCAGCGTCGACCATCATGATCTTCATCATCAAATCCCCACCCTCCGATCCTCATCAACGTCCGCTAACACACGACCTTCCCCTGCACCCGCATTCATCAACCCCCCAACACAGGACTTCACCAGCGAGATTGACCTTTGGAACTTCTCCCGATCCACGTCCTCACTGTTGGCATCCTCCGAACCACTGTGCCACGTGTCCAACACGTCAGTGTAG 1326 0.497 MPENMSISVNGQSQVPPGFRFHPTEEELLQYYLRKKVSYEKIDLDVIRDVDLNKLEPWDIQEKCKIGTTPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIYSNGKRIGMRKTLVFYKGRAPHGQKSDWIMHEYRLDDNNTSDTNIVSNVMADAAQEEGWVVCRIFKKKNHLKTLDSPIASGEGRRSHMFDSCDEGALEQILQQMGRGCKEESSYEGNYNSYGRFAMGLNNGGGGGYNDRFMKLPSLESPKSASMENHHNTNNNCNNNMKSNNNNNNNNNGYHPIIPVEMGTDNEGTFTTHQVSGGDPNNNNSNIVHPLEVGSGGGGLTNWAALDRLVASQLNGQTDASRQLGCAFNDPTMYCTSVDHHDLHHQIPTLRSSSTSANTRPSPAPAFINPPTQDFTSEIDLWNFSRSTSSLLASSEPLCHVSNTSV* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0159 441 SUPERFAMILY NAC domain 9 175 IPR036093 GO:0003677|GO:0006355
Gso16g0159 441 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 8 390 - -
Gso16g0159 441 Pfam No apical meristem (NAM) protein 16 143 IPR003441 GO:0003677|GO:0006355
Gso16g0159 441 MobiDBLite consensus disorder prediction 385 406 - -
Gso16g0159 441 ProSiteProfiles NAC domain profile. 15 175 IPR003441 GO:0003677|GO:0006355
Gso16g0159 441 PANTHER NAC DOMAIN-CONTAINING PROTEIN 12 8 390 - -
Gso16g0159 441 Gene3D NAC domain 24 180 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0159 Gso-Chr16 1718377 1721045 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0159 1 440 NAC Transcription Factor Family AT2G46770 51.556 4.60e-138 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso16g0159 NAM 4.3e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0159 - - gmx:100793308 843.188
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0454 7 4387133 4389784 Gso16g0159 16 1718377 1721045 GST