Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0154 ATGGTGGGTGGTAACATCAATTCAAGGCAATACAATGATACAACTTCTACCAAAATCTTTGTTGGAGGGTTAGCTTGGGAGACTCAAAGGGACACAATGAGAAGGTATTTTGAGCAGTTTGGAGAGATCTTAGAGGCTGTTGTCATCACAGACAAGAACACTGGGAAATCCAAGGGTTATGGTTTTGTCACATTCAAGGATCCAGAGGCAGCAATGAACGCATGTCAGAACCCCTCTCCAATAATTGATGGAAGGAGGGCAAACTGTAATATTGCAGCTATTGGTGCAAACAAGAATAGGACACAGGCTCCACAACATGGACAGTCTAGAGCAGCACCTGGTGTGTTGGCCTCACCTGCTTTTCATGGCCCTTCCTCTACATTTGTCAATCAAAACATTGGGCAATACACATTTCCTAATTCAAGTTTTGGCATATATACTGGATATTCACAAGACACAATGTACCCCATGAACTGCTATGGGATATTTGGAGGTCAACAGTTATCAACTTATTATCCCTCCAATGGGGCATCTGGGCAAGTGGGATTAGTCCATAACATTTACCCTTTTAGTGCCCATTATCCATACAATAGCCAGGCTCATGGTTTTGGTGTCCAATATCCACAAATGATGCAGTTTCCAATTCTCCCTAGGCACTATGGTTCAGCTGGTATCCTTGCACTTCCTTCTTCAATGGCAATGCCAATTACTAGTGCAGTTACAACAACAGCAACTACAACAACAACAACAGAGGCATTAAGAACAAGTGTGGGTGCTTCACAAACCGCTGGAACAACTTCTGAACAAAATTCTTCAGCTGAATCTCTACATAGATAA 837 0.4253 MVGGNINSRQYNDTTSTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGKSKGYGFVTFKDPEAAMNACQNPSPIIDGRRANCNIAAIGANKNRTQAPQHGQSRAAPGVLASPAFHGPSSTFVNQNIGQYTFPNSSFGIYTGYSQDTMYPMNCYGIFGGQQLSTYYPSNGASGQVGLVHNIYPFSAHYPYNSQAHGFGVQYPQMMQFPILPRHYGSAGILALPSSMAMPITSAVTTTATTTTTTEALRTSVGASQTAGTTSEQNSSAESLHR* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0154 278 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 76 IPR000504 GO:0003723
Gso16g0154 278 PANTHER - 1 255 - -
Gso16g0154 278 MobiDBLite consensus disorder prediction 245 278 - -
Gso16g0154 278 CDD RRM_RBM24_RBM38_like 17 92 - -
Gso16g0154 278 SMART rrm1_1 18 90 IPR000504 GO:0003723
Gso16g0154 278 PANTHER BOULE-RELATED 1 255 IPR037366 GO:0003729
Gso16g0154 278 Gene3D - 5 111 IPR012677 -
Gso16g0154 278 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 94 IPR000504 GO:0003723
Gso16g0154 278 SUPERFAMILY RNA-binding domain, RBD 10 100 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0154 Gso-Chr16 1642836 1644884 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0154 13 93 C2H2 Transcription Factor Family AT2G19380 40.741 3.17e-15 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0154 - - gmx:100786226 493.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0448 7 4315146 4317347 Gso16g0154 16 1642836 1644884 GST