Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0145 ATGGAGAGGCTCCAAGGACCCCTCAATTCCTGTTTCTTTGGAGACCCTTTGGGAGTGAATTGTTTGGACCATGTTCTGGTGGATGAAGAAAGCCTGAGACTAGAAGAGGAAGAACATCTTCTGATATCAAGCTTAGAGGACAACATGCCATTCCTTCAGATGCTTCAGAGTGTGGAATCCCCACAGTTTTTCCCTTTGAAAGAGACAAACTTTCAAACACTTCTGAGGCTGCAGCACAAGAAGAATCCATGGGAGGGAATAGCCTATTTTCCAAGAATGGAAGCACAACAAGTGCAAGCAGCATTGGAGCTAGAGAGTTGTGTGACACATGACATGTCCGAGATGCAGTACTCACCAGTGAAGTCAGAAAGCAATGAGCTCCAACACCCACTTTCAGTTTCATGTTTTGAGAAGAAAGTGAACTATGAGTGCAACCAGGAACCACAGAAAGTTTCACAAACATGCCCCAAATCTCAGCCAACAGCAACAAAGGAAAGGAGAAAGAGAAAGAGAACAAGGCCAAGCAAGAACAAGGAAGATGTGGAGAACCAACGCATGACTCACATTGCTGTTGAACGCAACCGGCGACGCCAAATGAATGACCACCTCAGTGTTCTTAGGTCCCTCATGCCACCTTCCTATATTCAAAGGGGTGACCAAGCCTCAATAATTGGGGGAGCAATAGATTTTGTGAAGGAGTTGGAGCAGTTGCTTCAGTCCCTTGAGGCACAAAAAAGGACGAGAAAGAATGAAGAGGGTGGTGGTGGTGGTGGTTCTTCTTCTTCTTCCTCTTCCACTATGTTGTGTAAGCCTCCACCACCACCATTATTATTATTATCATCACCACATGGCTATGGAATGAGGTCATCACCTAGTGATGAAGTGAACTGTGGAGATGAAGTGAAGGCAGAAAACAAGTCAGAGGCAGCAGACATAAAAGTGACATTGATTCAAACCCATGTGAACTTGAAAATTGAGTGCCAAAGGAAGCCAGGGCAATTGTTAAAGGTCATTGTTGCTTTGGAGGACCTTAGGCTAACCATTCTGCACCTCAACATCACTTCCTCAGAGACTTCTGTCCTTTACTCCCTCAATCTCAAGATTGAAGAAGATTGTAAGCTATGTTCAGCAAGTGACATTGCAGAAACGGTTCATCAAATATTCAGCTTCATTAATGGTGTAGCTAGAGACCACTAG 1197 0.4453 MERLQGPLNSCFFGDPLGVNCLDHVLVDEESLRLEEEEHLLISSLEDNMPFLQMLQSVESPQFFPLKETNFQTLLRLQHKKNPWEGIAYFPRMEAQQVQAALELESCVTHDMSEMQYSPVKSESNELQHPLSVSCFEKKVNYECNQEPQKVSQTCPKSQPTATKERRKRKRTRPSKNKEDVENQRMTHIAVERNRRRQMNDHLSVLRSLMPPSYIQRGDQASIIGGAIDFVKELEQLLQSLEAQKRTRKNEEGGGGGGSSSSSSSTMLCKPPPPPLLLLSSPHGYGMRSSPSDEVNCGDEVKAENKSEAADIKVTLIQTHVNLKIECQRKPGQLLKVIVALEDLRLTILHLNITSSETSVLYSLNLKIEEDCKLCSASDIAETVHQIFSFINGVARDH* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0145 398 MobiDBLite consensus disorder prediction 245 298 - -
Gso16g0145 398 CDD bHLH_AtFAMA_like 186 252 - -
Gso16g0145 398 Gene3D - 174 253 IPR036638 GO:0046983
Gso16g0145 398 PANTHER MAX DIMERIZATION, MAD 19 393 - -
Gso16g0145 398 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 183 248 IPR036638 GO:0046983
Gso16g0145 398 Pfam Helix-loop-helix DNA-binding domain 184 235 IPR011598 GO:0046983
Gso16g0145 398 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 183 234 IPR011598 GO:0046983
Gso16g0145 398 Coils Coil 231 251 - -
Gso16g0145 398 MobiDBLite consensus disorder prediction 147 185 - -
Gso16g0145 398 PANTHER TRANSCRIPTION FACTOR BHLH70 19 393 - -
Gso16g0145 398 SMART finulus 189 240 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0145 Gso-Chr16 1572482 1575540 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0145 43 393 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G01460 43.343 6.13e-70 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso16g0145 HLH 3.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0145 - - gmx:100783582 721.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0440 7 4242962 4246355 Gso16g0145 16 1572482 1575540 GST