Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0139 ATGGAGTTGATGCAAGAAGTGAAAGGGTACTCTGATAGCAGAGAGGAGGAGGAGGAGGAAGAGGGAGCAGCAGAAGAAGAAAGCAGCCGGTTGTTACACCAGCACCAGGATGCAGCAGGTTCCAATTTCATCATCAACAACAATCAACATCATCAACATCACCACACAACAAAGCAGCTAGATTTCATGGACTTGTCACTTGGTAGCAGCAAGGATGAAGGGAATTTGCCAGGATCTTCTTCTTCTGTCTATGCTCATCATCATGCAGCAAGTGGTAGTTCTTCTGTCAATGGTAACAACAACCTGCAGCAACAGCAACAGCCTGCTGAGAAGGAGCACATGTTTGATAAAGTAGTGACACCAAGTGATGTGGGGAAGCTGAACAGGTTGGTGATACCAAAGCAGCATGCTGAGAAGTATTTCCCTCTTGATTCCTCAGCCAATGAGAAGGGTCTGTTGCTGAATTTTGAGGACAGGAATGGAAAGTTGTGGAGGTTCAGGTACTCCTATTGGAACAGCAGCCAGAGCTATGTGATGACCAAAGGTTGGAGCCGTTTTGTCAAAGAGAAGAAGCTTGATGCGGGTGACATTGTTTCCTTCCAGCGTGGTGTTGGAGAATCGTATAGGCATAGGTTGTACATAGATTGGAAGAGAAGGCGTGATCATCATCATCATCACCATCATGGCCCTGTCGACCCTTCAACCACACTCTTCACACCTTTCTTTCTTCCCAATCAGCCTCATCACTTAATGTCCATCAGATGGGGTGCCACTGACAGATTGTACTCCCTCCCTTCCCCAACCCCACCACGCCACCATGACCATTTGCAACATCAACAACCCCTCAATTACAACAACAACACCATGTATCATCCCTTTCATCACCATGGTGGTGGAAGTGGAATTAATGGTACTACTCATCACTACAACAATTACTATCATGAGATGAGTAGTACTACTAATACTACCACTTCAGGATCTGGCTCAGTCTTTTACCTCAGGTCAACACCCCCATCAATGCCATTGGCTGATCACCAAACCTTGAACACAAGACAACAACAGCAGCAACAGCAACAACAACAACAACAAGAGGGAGGTGGCAATGTTTCACTTCCTCCTATGATCATTGATTCTGTTCCAGTTGCTCACCACCTCCATCATCATCATCATCAACATCAACATCAACATCAACACCATGGTGGCAAGAGTAGTGGTTCTAGTAGTCCTAGCACTGCAGGGAAAAGACTAAGGCTATTTGGGGTGAACATGGAATGTGCTTCTTCAACAACATCAGAAGACCACCCCAAATGCTTCAGCTTGCTGTCCTCATCTTCATCAATGGCTAATTCCAATTCTTCACTACCACCACTTCAGCTTTTGAGGGAAGACACACTTTCATCATCAGCAGCAGCAGCAGCAAGGTTTGGAGATCAGAGAGGAGGAGTAGGGGAACCTTCAACTTCAATCTTTTTTGATCTGGACCCTTCTTTGCAATACCGGAAGCGATAA 1509 0.4579 MELMQEVKGYSDSREEEEEEEGAAEEESSRLLHQHQDAAGSNFIINNNQHHQHHHTTKQLDFMDLSLGSSKDEGNLPGSSSSVYAHHHAASGSSSVNGNNNLQQQQQPAEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSANEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGVGESYRHRLYIDWKRRRDHHHHHHHGPVDPSTTLFTPFFLPNQPHHLMSIRWGATDRLYSLPSPTPPRHHDHLQHQQPLNYNNNTMYHPFHHHGGGSGINGTTHHYNNYYHEMSSTTNTTTSGSGSVFYLRSTPPSMPLADHQTLNTRQQQQQQQQQQQQEGGGNVSLPPMIIDSVPVAHHLHHHHHQHQHQHQHHGGKSSGSSSPSTAGKRLRLFGVNMECASSTTSEDHPKCFSLLSSSSSMANSNSSLPPLQLLREDTLSSSAAAAARFGDQRGGVGEPSTSIFFDLDPSLQYRKR* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0139 502 MobiDBLite consensus disorder prediction 319 368 - -
Gso16g0139 502 CDD B3_DNA 113 214 IPR003340 GO:0003677
Gso16g0139 502 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 59 451 - -
Gso16g0139 502 SUPERFAMILY DNA-binding pseudobarrel domain 111 219 IPR015300 -
Gso16g0139 502 Coils Coil 7 34 - -
Gso16g0139 502 MobiDBLite consensus disorder prediction 72 109 - -
Gso16g0139 502 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 59 451 IPR044800 GO:0003700
Gso16g0139 502 MobiDBLite consensus disorder prediction 1 31 - -
Gso16g0139 502 MobiDBLite consensus disorder prediction 71 112 - -
Gso16g0139 502 Pfam B3 DNA binding domain 115 218 IPR003340 GO:0003677
Gso16g0139 502 MobiDBLite consensus disorder prediction 383 399 - -
Gso16g0139 502 MobiDBLite consensus disorder prediction 319 413 - -
Gso16g0139 502 Gene3D - 109 229 IPR015300 -
Gso16g0139 502 SMART B3_2 115 220 IPR003340 GO:0003677
Gso16g0139 502 ProSiteProfiles B3 DNA-binding domain profile. 115 218 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0139 Gso-Chr16 1478979 1481744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0139 106 428 RAV Transcription Factor Family AT2G46870 44.817 4.80e-71 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gso16g0139 B3 7e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0139 - - gsj:114390989 837.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0431 7 4135888 4138626 Gso16g0139 16 1478979 1481744 GST