Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0138 ATGGATGATGATATTGTAGGACTCGGTTTTCGTCCAACAGAACAAGAGCTTGTCAACTTTTACCTCAAACACAAGTTGCTCGGCGATGATCCCCGTGTCCACGTCATCCCTGTCATTGATCTTTGCGATGTGGAACCTTGGAATGTACCAGTGATATTAGCATCGTCATCAGCTATACGATTTGGTGACCCAGATTGGTTTTTCTTCAGCCCTGTTGATTTCAAGTACTTGAAAAGCAAAAGGTTTAACAGGACAACCAAGTGTGGATTCTGGAAAGCCACTGGGAAAGACCGTGACATTAGGACAGGGGACACTGATAACACTGTCATTGGGACTAAGAAGACTCTTGTTTACTATCAAGGCCGTGTTTCCTGTGGTGTCAAGTCCAACTGGGTTATTCACGAATATCATGCTGTTACCTTTCATGAAAACCAGAGGACTTTTGTTTTATGTTGCTTGATGAAGAAACCTGGGAAAACAACTGAAGGCGGAACTGATCCCCTGATCTGTGATGAAGGGGAGCCCAGCAGAAGCATGGTTTCTGACTATGAAAATCAGCCAACAGCAGAAGGAATTGCATCTGAAGGTACTTTTACAGGAATAGAGGCAATCTTTCAGGCAACCCCTTGGGCAGAGAATTGCTTCTCCCCAATACAACAGTCTCCGACTCTTATTGAGCAGGAAGGAGCATCCTTTCCAAACTATGCATTTAACAATGCCTATTTTAGAAATGAAGACAACATTATGCAGACTCCATTTGAAACTACAAAGGAAGATGAATTCCTAAATTTAATCTTAGCCGATGAAAGTATAGTGATCAATGAAGAAAATAAGCATGATTTTGTCAATAGCTCTACCCAATCAGAGTCATTGAAAAGGGTATCCTGTGAAAGCAGTGATACAGATGCTGAAGTCATCTCTAAACTGGATGACAATATTGTGGATATTTCAACAGCATGTAATGATTATCCTAATTCAGATGAATACTATTCATCAAAAAGGTTTAAATCATCACATGATGCTGTCCATGGTGGAATATGTTTTCTACTTTCTAACCTTGAAGCAAACCAAGAGAAAAACGAGAGTATGTTTCAAGATAGTTTCTGGGGAACAGAGACATCATCTTGTGACTCCACACTAGATAAACCTTTGGAGATCAATTATATTGATATTTCTAGTTCTCCTTTCACTCCATGGAGATGA 1203 0.4023 MDDDIVGLGFRPTEQELVNFYLKHKLLGDDPRVHVIPVIDLCDVEPWNVPVILASSSAIRFGDPDWFFFSPVDFKYLKSKRFNRTTKCGFWKATGKDRDIRTGDTDNTVIGTKKTLVYYQGRVSCGVKSNWVIHEYHAVTFHENQRTFVLCCLMKKPGKTTEGGTDPLICDEGEPSRSMVSDYENQPTAEGIASEGTFTGIEAIFQATPWAENCFSPIQQSPTLIEQEGASFPNYAFNNAYFRNEDNIMQTPFETTKEDEFLNLILADESIVINEENKHDFVNSSTQSESLKRVSCESSDTDAEVISKLDDNIVDISTACNDYPNSDEYYSSKRFKSSHDAVHGGICFLLSNLEANQEKNESMFQDSFWGTETSSCDSTLDKPLEINYIDISSSPFTPWR* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0138 400 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 6 316 - -
Gso16g0138 400 Pfam No apical meristem (NAM) protein 7 137 IPR003441 GO:0003677|GO:0006355
Gso16g0138 400 Gene3D NAC domain 13 160 IPR036093 GO:0003677|GO:0006355
Gso16g0138 400 SUPERFAMILY NAC domain 6 156 IPR036093 GO:0003677|GO:0006355
Gso16g0138 400 ProSiteProfiles NAC domain profile. 4 156 IPR003441 GO:0003677|GO:0006355
Gso16g0138 400 PANTHER NAC DOMAIN CONTAINING PROTEIN 49 6 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0138 Gso-Chr16 1457300 1460577 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0138 1 163 NAC Transcription Factor Family AT4G35580 45.238 1.63e-41 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso16g0138 NAM 2.3e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0138 - - gmx:100780890 822.002
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0430 7 4115529 4118702 Gso16g0138 16 1457300 1460577 GST