Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0137 ATGGATGATATTGTAGGATACGGTTTTCGTCCAACAGATGAAGAGCTTGTGAAGTTCTACCTCAAACACAAGTTGCTCGATGATGATCCCTGTGTCCACGTCATCCTCGACGTTGACCTTTGTGAAGTGGAACCTTGGGACGTACCATTGTTATTAGCAGATTCAGCTGTGCGATTCAATGGCCGTGAATGGTTCTTCTTCAGTCCTGTTGATTACAAGTATTCAAATAGTAAAAGGGTTAACAGGACAACCAAGTGTGGCTTCTGGAAACCCACTGGAAAAGACCGTGGCATTAGGAGCAAGGACACCAACAATGTCATTGGGACTAAGAAAACTCTAGTTTACTATCAAGGCCGTGTTTCTAGTGGTGTCAAGTCCAATTGGGTTATTCATGAATATCATGCTGTTACCTTTCATGAAAGCCAGAGGACTTTTGTTTTATGTCGCTTGATGAAGAAACCTGGGAAAACAACTGAAGGTGGAACTGATGCACTGATCTGTGATGAAGGGGGGCCCAGTAGAAGCATGGTTTCTGACTATGAAAATCAGGCAACAACACAAGGAATTCCATCTGGAGGTACTTTTACAGGAATGGAAACAACCTTTCAGGGAATGCATCTGGCTGAGAAATACTTCTCCCCAACACAACAGTCTCCCACTGGTATTGAGCAGGAAGAACCATCCTTTACAAACTATCCATTTAACAATGCCTATTTTAGAAATGAAGACAACTTTATGCAGACTCCATTTGAAACTAAGGAGGAAGATGCGTTCCTGAATTCAATTTTTGTTGATGAGAATTTAGTTATCAATGAAGAAAGTATGCATGCTTTTGTCAATAGCTCCACCCAATCAGAGTCATTGAGAAGGGTATATTGTGAAAGCAGTGATACAGATGCTGAAGTAGTCTCTGAAAGGGATGATAATATTGTTGATGTTTCAACAATGTGCAACGAATATCCTAATTCAGACGGATACTATTCATCAGAAAGGTTTGAATCATCACATGGTGCTGTCCAAGATAGCTTATGTCTTCTATCTACTAACCACGAAGCAAACCAAGAGACAATGGAAAGTATACTCCAAAATAATTTCTGGGGAATGGAGCAATCCTATTGTGACTCTACTGCAAATAAACCTTTGGAGATCAATTATACTGAAATTTCTAGTTCTCCTTCCACTCGGAGGAGATGGATAAATCAGTATCATCCAAGACCAGACTACTTCACATCCCAAAAGACTGATGAAGATCTGAGACACAGAGGAAGGTTTCAAACAATGCAGTATCGCATGTAG 1296 0.4059 MDDIVGYGFRPTDEELVKFYLKHKLLDDDPCVHVILDVDLCEVEPWDVPLLLADSAVRFNGREWFFFSPVDYKYSNSKRVNRTTKCGFWKPTGKDRGIRSKDTNNVIGTKKTLVYYQGRVSSGVKSNWVIHEYHAVTFHESQRTFVLCRLMKKPGKTTEGGTDALICDEGGPSRSMVSDYENQATTQGIPSGGTFTGMETTFQGMHLAEKYFSPTQQSPTGIEQEEPSFTNYPFNNAYFRNEDNFMQTPFETKEEDAFLNSIFVDENLVINEESMHAFVNSSTQSESLRRVYCESSDTDAEVVSERDDNIVDVSTMCNEYPNSDGYYSSERFESSHGAVQDSLCLLSTNHEANQETMESILQNNFWGMEQSYCDSTANKPLEINYTEISSSPSTRRRWINQYHPRPDYFTSQKTDEDLRHRGRFQTMQYRM* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0137 431 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 5 346 - -
Gso16g0137 431 Pfam No apical meristem (NAM) protein 5 134 IPR003441 GO:0003677|GO:0006355
Gso16g0137 431 SUPERFAMILY NAC domain 5 153 IPR036093 GO:0003677|GO:0006355
Gso16g0137 431 Gene3D NAC domain 12 158 IPR036093 GO:0003677|GO:0006355
Gso16g0137 431 PANTHER NAC DOMAIN CONTAINING PROTEIN 49 5 346 - -
Gso16g0137 431 ProSiteProfiles NAC domain profile. 3 153 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0137 Gso-Chr16 1440267 1443851 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0137 5 160 NAC Transcription Factor Family AT4G35580 47.826 8.63e-43 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso16g0137 NAM 1.1e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0137 - - gmx:100779816 896.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0428 7 4039124 4041911 Gso16g0137 16 1440267 1443851 GST