Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0125 ATGACTATGATGAGCAGCAGCAACAACAACGTTGGAGAATTTGGAGACACCACTCTGACCAAGGTTTTTGTTGGGGGCTTAGCTTGGGAGACTCCGAAGGATGCCCTTAAAGACCACTTTGAGAAGTATGGTCAGATCCTTGAAGCTGTCATCATTTCCGATAAGCACACTGGCAAATCCAAAGGCTATGGCTTTGTGACTTTCAAGGAGGCTGAGGCTGCCAAGAAGGCTTGTGAGAATTCAACAACTCTCATTATCAATGGCCGTCGAGCGAATTGCAATCTTGCTTTCCTAGGTGCTCGTCGCCCAAGGTCTTCTTCCAATGTTTCACCTCCTCCACCGCAAGCACAAGGGGGATCCAACGGTGGAATAGTGAAGAATGTTAACAATGCATCAGGTCCACCACCAGCCATTAATCACGTGCAGCCATATTATTATCCAGTGAGGACAACTGCTCTGCCATTCCATAATCACACTCTTCCTTTCTATGGGTATGCGCCTACCTACATTGTTACTGACGTAAACTACAATTACAATCAGAATCAGAAACTGTGCTATGGTAGCGGTGGGGCCTACATGAATGGGCAGCATGTGTACCCGAGGCAGGCTATTGTGGGCGGCAACACACTGATGCCAATGTATCCTCTCTATCAGTATCACCATCCAACGGAGACCATTGGCGTGCCAGCTCATCACAACTTTTATCAAACGGCACCGTGGGTCCCAATGACCATCATGTCCAAGCCATCGTCTATCGTTCCTCACACAGGTACAGTTGGCACAGGTGAGTGTTTTAAAAGGGTTGTCTGA 810 0.479 MTMMSSSNNNVGEFGDTTLTKVFVGGLAWETPKDALKDHFEKYGQILEAVIISDKHTGKSKGYGFVTFKEAEAAKKACENSTTLIINGRRANCNLAFLGARRPRSSSNVSPPPPQAQGGSNGGIVKNVNNASGPPPAINHVQPYYYPVRTTALPFHNHTLPFYGYAPTYIVTDVNYNYNQNQKLCYGSGGAYMNGQHVYPRQAIVGGNTLMPMYPLYQYHHPTETIGVPAHHNFYQTAPWVPMTIMSKPSSIVPHTGTVGTGECFKRVV* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0125 269 CDD RRM_RBM24_RBM38_like 20 96 - -
Gso16g0125 269 PANTHER RNA-BINDING PROTEIN ARP1-RELATED 3 258 - -
Gso16g0125 269 SUPERFAMILY RNA-binding domain, RBD 16 122 IPR035979 GO:0003676
Gso16g0125 269 SMART rrm1_1 21 94 IPR000504 GO:0003723
Gso16g0125 269 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 20 98 IPR000504 GO:0003723
Gso16g0125 269 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 22 90 IPR000504 GO:0003723
Gso16g0125 269 MobiDBLite consensus disorder prediction 102 132 - -
Gso16g0125 269 Gene3D - 4 110 IPR012677 -
Gso16g0125 269 PANTHER GEO13361P1-RELATED 3 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0125 Gso-Chr16 1338566 1341435 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0125 16 169 C2H2 Transcription Factor Family AT2G19380 29.747 2.57e-17 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0125 - - gmx:100813699 543.117