Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0123 ATGACCAACCATCACCTCAAACACTCCATTCTCTCCTCCTCAGTTTTTCTCATGCCATCACCATCTTCATCTTCTTCTGCATATTCCCTTTACATGGTTTCCAAGTTAATGGTCTCAATCATAGTCTCCTTATTCCTTTTGTCCTTGTTTGTTTTCCAAGTCTCCTCTTGTGACCAGATTGATAAACTGTCCCTCTTGGCCTTCTCTGGCAACATATCCACCTCTCCACCTTATCCTTCTCTTGATTGGTCTGATTCTCTTGATTGTTGTAGCTGGGAAGGCATTACTTGTGATGGAGATCTTAGAGTCACACACCTTTTGCTACCATCTAGAGGCCTCACTGGCTTCATCTCCCCCTCTCTCACAAACCTCTCTTCTCTCTCTCACCTTAATCTCTCCCATAATAGATTGTCTGGTACTCTCCAACACCACTTTTTCTCATTGCTCAATCACTTGTTGGTTCTTGATTTGAGCTACAACCGTCTCTCTGGTGAGTTGCCACCTTTTGTTGGTGATATTAGCAGCGATGGTGTTATTCAGGAGCTGGATTTGTCTAGTAACCTTTTCAATGGGGCACTTCCAAATTCTTTGCTTGAGCACTTGGCAGCTGCAGCAGCTGGAGGGAGTTTTGTGTCTTTGAATGTTAGTAATAACAGTCTCACAGGTCATATTCCCACTTCTCTCTTTTGCATTAATGACCATAACAACTCATCCTCTCTCAGATTCTTGGATTATTCCTCCAATGAATTTGATGGTGCCATTCAGCCTGGACTAGGAGCATGTTCCAAGTTGGAGAAGTTCAGAGCAGGTTTCAATTTTCTCTCAGGGCCTATCCCAAGTGATCTTTTTCATGCTGTTTCTCTCACAGAAATCTCATTGCCCCTTAATAGACTCACTGGAACAATTGGTGATGGCATTGTTGGACTTAGCAACCTCACAGTTTTGGAGCTCTACTCCAATCATTTCACAGGTTCAATCCCCCATGATATTGGTGAACTCTCCAAGCTGGAACGGTTACTCCTTCATGTCAACAATTTGACAGGTACTATGCCCCAATCTCTGATGAACTGTGTCAATCTTGTGGTATTGAATTTAAGGGTCAACGTCTTGGAGGGAAATCTCTCTGCATTCAATTTCTCAGGATTCCTCAGACTTACCACACTTGACCTTGGCAACAATCATTTTACTGGTGTTTTACCACCAACACTTTATGCATGCAAGTCACTTTCAGCTGTGAGGCTAGCATCTAATAAACTTGAGGGAGAGATTTCACCCAAGATACTTGAACTAGAGTCTTTGTCTTTCCTATCAATTTCTACTAACAAGTTGAGGAATGTCACTGGGGCTCTTAGAATACTCAGGGGGCTCAAGAACCTTAGTACCCTTATGCTCTCCAAGAATTTTTTCAATGAAATGATACCACAAGATGTGAACATAATAGAGCCGGATGGATTCCAAAAACTCCAGGTTTTAGGATTTGGTGGTTGTAATTTCACAGGTCAAATACCAGGTTGGCTTGCAAAACTGAAGAAGCTTGAGGTCTTGGACCTGTCCTTTAATCAAATTAGTGGTCCAATTCCTCCTTGGTTGGGTAAACTTTCTCAGCTTTTTTACATGGACTTGTCTGTTAACCTCCTTACAGGAGTATTTCCAGTAGAGCTCACAGAACTCCCAGCACTGGCATCACAGCAGGCAAATGATAAAGTGGAAAGGACTTACTTTGAGTTACCTGTGTTTGCTAATGCAAACAATGTTTCCCTACTGCAATATAATCAGCTTTCAGGCCTACCTCCAGCAATATATCTGGGAAGCAATCACCTTAATGGAAGTATCCCTATTGAGATTGGGAAACTCAAAGTCCTTCATCAGCTGGATCTGAAAAAGAACAACTTCTCTGGCAGTATACCAGTTCAGTTTTCAAACTTGACTAACTTAGAGAAACTAGACCTCTCCGGAAACCAACTATCTGGGGAAATTCCTGATTCCCTCAGAAGATTACATTTCTTGTCTTTTTTCAGTGTAGCATTCAATAATCTTCAAGGACAGATACCCACTGGTGGTCAATTTGATACTTTCTCCAACTCCAGCTTTGAAGGAAATGTGCAATTGTGCGGTTTGGTTATTCAGCGCTCTTGTCCTTCTCAACAAAATACTAATACTACTGCAGCTAGTCGCAGCTCAAACAAAAAAGTGCTGCTTGTACTCATCATTGGAGTCAGTTTTGGCTTTGCTTCCTTGATAGGAGTGTTGACACTGTGGATACTCTCCAAGAGGAGGGTCAATCCAGGAGGAGTGTCTGACAAGATTGAAATGGAATCAATTTCTGCCTATTCCAACAATGGAGTTCATCCTGAGGTTGACAAGGAGGCTAGCTTAGTGGTATTGTTTCCCAACAAGAATAATGAAACCAAGGACCTTACCATATTTGAGATCCTAAAATCCACTGAAAATTTCAGTCAGGAAAACATAATAGGATGCGGCGGTTTTGGTTTGGTTTACAAAGCAACATTACCAAATGGAACTACACTGGCCATCAAGAAACTTTCAGGAGACTTGGGCCTCATGGAAAGGGAATTCAAAGCAGAAGTAGAGGCTTTGTCAACAGCACAACATGAGAATCTGGTGGCATTGCAAGGCTATTGTGTGCATGATGGATTCCGGCTTCTCATGTATAATTACATGGAAAATGGAAGCCTGGACTACTGGTTGCATGAAAAGCCTGATGGTGCATCTCAACTTGATTGGCCAACTCGCTTGAAGATCGCACAAGGTGCAAGCTGTGGTTTGGCTTATTTGCATCAGATATGCGAGCCACACATTGTGCATCGTGATATAAAGTCGAGCAACATACTCCTTAATGAAAAATTTGAGGCACATGTTGCTGATTTTGGGTTGTCTAGATTGATTCTTCCATATCATACTCATGTTACAACTGAACTTGTAGGTACATTAGGCTACATTCCACCAGAGTATGGACAAGCGTGGGTGGCTACTCTGAGAGGAGATGTGTACAGCTTTGGGGTTGTCATGCTTGAACTGATCACTGGGAGAAGGCCTGTAGATGTATGCAAGCCAAAAATGTCAAGGGAGTTGGTTGGCTGGGTTCAACAAATGAGGATTGAAGGAAAACAAGATCAAGTATTTGACCCTCTTCTGAGAGGGAAGGGGTTTGAAGTACAGATGCTAAAGGTACTGGATGTGGCTTGCATGTGTGTCAGCCACAATCCTTTCAAGAGACCAAGCATCAGAGAAGTTGTTGAATGGCTGAAGAATGTTGGATCAGACAACCAGCCAACACAGAAATAA 3306 0.4241 MTNHHLKHSILSSSVFLMPSPSSSSSAYSLYMVSKLMVSIIVSLFLLSLFVFQVSSCDQIDKLSLLAFSGNISTSPPYPSLDWSDSLDCCSWEGITCDGDLRVTHLLLPSRGLTGFISPSLTNLSSLSHLNLSHNRLSGTLQHHFFSLLNHLLVLDLSYNRLSGELPPFVGDISSDGVIQELDLSSNLFNGALPNSLLEHLAAAAAGGSFVSLNVSNNSLTGHIPTSLFCINDHNNSSSLRFLDYSSNEFDGAIQPGLGACSKLEKFRAGFNFLSGPIPSDLFHAVSLTEISLPLNRLTGTIGDGIVGLSNLTVLELYSNHFTGSIPHDIGELSKLERLLLHVNNLTGTMPQSLMNCVNLVVLNLRVNVLEGNLSAFNFSGFLRLTTLDLGNNHFTGVLPPTLYACKSLSAVRLASNKLEGEISPKILELESLSFLSISTNKLRNVTGALRILRGLKNLSTLMLSKNFFNEMIPQDVNIIEPDGFQKLQVLGFGGCNFTGQIPGWLAKLKKLEVLDLSFNQISGPIPPWLGKLSQLFYMDLSVNLLTGVFPVELTELPALASQQANDKVERTYFELPVFANANNVSLLQYNQLSGLPPAIYLGSNHLNGSIPIEIGKLKVLHQLDLKKNNFSGSIPVQFSNLTNLEKLDLSGNQLSGEIPDSLRRLHFLSFFSVAFNNLQGQIPTGGQFDTFSNSSFEGNVQLCGLVIQRSCPSQQNTNTTAASRSSNKKVLLVLIIGVSFGFASLIGVLTLWILSKRRVNPGGVSDKIEMESISAYSNNGVHPEVDKEASLVVLFPNKNNETKDLTIFEILKSTENFSQENIIGCGGFGLVYKATLPNGTTLAIKKLSGDLGLMEREFKAEVEALSTAQHENLVALQGYCVHDGFRLLMYNYMENGSLDYWLHEKPDGASQLDWPTRLKIAQGASCGLAYLHQICEPHIVHRDIKSSNILLNEKFEAHVADFGLSRLILPYHTHVTTELVGTLGYIPPEYGQAWVATLRGDVYSFGVVMLELITGRRPVDVCKPKMSRELVGWVQQMRIEGKQDQVFDPLLRGKGFEVQMLKVLDVACMCVSHNPFKRPSIREVVEWLKNVGSDNQPTQK* 1102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0123 1101 SMART serkin_6 818 1089 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g0123 1101 Gene3D Ribonuclease Inhibitor 203 282 IPR032675 -
Gso16g0123 1101 ProSitePatterns Protein kinases ATP-binding region signature. 824 847 IPR017441 GO:0005524
Gso16g0123 1101 ProSiteProfiles Leucine-rich repeat profile. 644 666 IPR001611 GO:0005515
Gso16g0123 1101 SUPERFAMILY L domain-like 82 301 - -
Gso16g0123 1101 Gene3D Phosphorylase Kinase; domain 1 782 893 - -
Gso16g0123 1101 Gene3D Transferase(Phosphotransferase) domain 1 894 1101 - -
Gso16g0123 1101 SUPERFAMILY Protein kinase-like (PK-like) 804 1089 IPR011009 -
Gso16g0123 1101 PANTHER LEUCINE RICH REPEAT KINASE 2 37 1093 - -
Gso16g0123 1101 SMART LRR_typ_2 309 333 IPR003591 -
Gso16g0123 1101 SMART LRR_typ_2 382 406 IPR003591 -
Gso16g0123 1101 SMART LRR_typ_2 124 148 IPR003591 -
Gso16g0123 1101 SMART LRR_typ_2 430 452 IPR003591 -
Gso16g0123 1101 SMART LRR_typ_2 509 533 IPR003591 -
Gso16g0123 1101 SMART LRR_typ_2 642 666 IPR003591 -
Gso16g0123 1101 SMART LRR_typ_2 149 173 IPR003591 -
Gso16g0123 1101 PANTHER OS06G0692500 PROTEIN 37 1093 - -
Gso16g0123 1101 Pfam Leucine rich repeat N-terminal domain 61 98 IPR013210 -
Gso16g0123 1101 Gene3D Ribonuclease Inhibitor 283 378 IPR032675 -
Gso16g0123 1101 PRINTS Leucine-rich repeat signature 127 140 - -
Gso16g0123 1101 PRINTS Leucine-rich repeat signature 642 655 - -
Gso16g0123 1101 Gene3D Ribonuclease Inhibitor 59 202 IPR032675 -
Gso16g0123 1101 SUPERFAMILY L domain-like 242 700 - -
Gso16g0123 1101 Pfam Leucine rich repeat 600 655 IPR001611 GO:0005515
Gso16g0123 1101 Pfam Leucine Rich Repeat 511 533 IPR001611 GO:0005515
Gso16g0123 1101 Pfam Leucine Rich Repeat 384 403 IPR001611 GO:0005515
Gso16g0123 1101 Gene3D Ribonuclease Inhibitor 379 721 IPR032675 -
Gso16g0123 1101 ProSiteProfiles Protein kinase domain profile. 818 1089 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g0123 1101 ProSitePatterns Serine/Threonine protein kinases active-site signature. 940 952 IPR008271 GO:0004672|GO:0006468
Gso16g0123 1101 Pfam Protein kinase domain 819 1087 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0123 Gso-Chr16 1314946 1318717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0123 32 753 Miscellaneous Gene Families AT1G17240 50.548 0.0 645
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Gso16g0123 Pkinase 2.4e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0123 - - gmx:100807989 1999.17