Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0119 ATGGCTTCAATTCGCGCCTTCTTCACAGCCATTGCTTTTGTGGCTCAATCATTTCAAAACTACATGATCCAGAGTCTGCACAAACTTTACAAGCATTATGGATATGCTGCTGAAGTGAAGGACAATGAAGAGAAAGAAAGTGATTATTGTTCTGTGTGTCTAAGCCAAATTTGTAAAGGGGAAAAAGCTAAGTCTCTTCCCGTGTGCAACCACAGATACCATGTTGATTGTATTGGTGCTTGGTTGAAGAATCATACCACATGCCCTCTTTGTAGGAACAATATCACTGATCATATCACCCAAAAACATAAACAGGTGAAGAGCTTAGGAGAATCTTTGTTCAATCTCATTCAGAGTTTCTCTGATCTATTGGTAGCTATTCTCTACATGATGCTTCCATCTACCATCACTGAGAGTTTCCCTTTGGTTCATTAA 435 0.3931 MASIRAFFTAIAFVAQSFQNYMIQSLHKLYKHYGYAAEVKDNEEKESDYCSVCLSQICKGEKAKSLPVCNHRYHVDCIGAWLKNHTTCPLCRNNITDHITQKHKQVKSLGESLFNLIQSFSDLLVAILYMMLPSTITESFPLVH* 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0119 144 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 22 100 IPR044675 -
Gso16g0119 144 SMART ring_2 50 91 IPR001841 -
Gso16g0119 144 ProSiteProfiles Zinc finger RING-type profile. 50 92 IPR001841 -
Gso16g0119 144 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 98 IPR013083 -
Gso16g0119 144 Pfam Ring finger domain 49 92 IPR001841 -
Gso16g0119 144 SUPERFAMILY RING/U-box 40 98 - -
Gso16g0119 144 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-RELATED 22 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0119 Gso-Chr16 1293713 1294584 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0119 45 95 C3H Transcription Factor Family AT1G53820 54.902 2.01e-17 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0119 - - gmx:100500375 300.441