Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0118 ATGAGTGCAAGTGACGACACATGGGGTGAATCTGGCACAATTGAGATCACAGGGAAGATCATGGTGGTGGCCATAATATTCCTCTTCATGGTAGTTGTCTTTGTTCTTGTGCTTCACCTCTATGCAAAATGGTTCTGGTGGAGCATGGAGGAGAACGCCGCCCCTCAGCCCCGCCGCCGCCGCCGCCGCCGTAGGTTTGTCTTCGCCCCCGGCCAAGACCCGGTGATCTATGAGACACACCAAGTTGGACTTGACCCTTCAGTTCTTAAGTCCTTGGCAGTGTTGGTTTTCCAACCTGAGGAATTCAAAGAAGGTTTGGAGTGTGCAGTTTGTCTCTCTGAGATTGTTGAAGGTGAAAAGTTAAGGCTTTTGCCTAAATGCAATCATGGGTTTCATGTGGATTGCATCGACATGTGGTTCCATTCACACTCCACTTGTCCTCTTTGTAGGAACCCTGTTACTTTTGAATCATCCAAAATTGAAGAGAATAATAATGTCTTGGGGAGTAGTGAGGACTCATCATCATCACATGAAGAGAATTCAGGTGGTGGGAGTGGTTTGGAGCCTTCCAATTTTCCCACAAATGTGTTGGTTTGGGGGAACCAGACACAAGTTAGTTCCTTTGGGGTTTCCTTAGAAGATTCCTTAGAAGAAAAACAAGAACAAGGCACTTCTCAGTGTCAGCAACCACCACCTTGTTCTCCATCACCTACGCCATCTTCTTCTTCTTCTTCTGCCAGAGGTAATGTTAATGGAAGGTGTCATGGAATGTTGGTGATTGATATTCCAAATGAGTGCACTTCCTCCTCTTTGTCACCTTCTGGGAGTAGGTGTGCTGAAGATGAGGTGAAATCACCAATGGCTGTCACATTGAGGTCATTCAAGAGGCTTTTGAGCAGGGAAAAAAAGTTAAGTCCTTGTAGTCCAAGTTCTGTAGATGTGGAACAAGCACAGAGCTAG 960 0.4625 MSASDDTWGESGTIEITGKIMVVAIIFLFMVVVFVLVLHLYAKWFWWSMEENAAPQPRRRRRRRRFVFAPGQDPVIYETHQVGLDPSVLKSLAVLVFQPEEFKEGLECAVCLSEIVEGEKLRLLPKCNHGFHVDCIDMWFHSHSTCPLCRNPVTFESSKIEENNNVLGSSEDSSSSHEENSGGGSGLEPSNFPTNVLVWGNQTQVSSFGVSLEDSLEEKQEQGTSQCQQPPPCSPSPTPSSSSSSARGNVNGRCHGMLVIDIPNECTSSSLSPSGSRCAEDEVKSPMAVTLRSFKRLLSREKKLSPCSPSSVDVEQAQS* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0118 319 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 159 IPR013083 -
Gso16g0118 319 SUPERFAMILY RING/U-box 88 156 - -
Gso16g0118 319 CDD RING-H2_EL5_like 107 150 - -
Gso16g0118 319 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 3 316 IPR044675 -
Gso16g0118 319 MobiDBLite consensus disorder prediction 165 193 - -
Gso16g0118 319 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
Gso16g0118 319 MobiDBLite consensus disorder prediction 265 285 - -
Gso16g0118 319 SMART ring_2 108 149 IPR001841 -
Gso16g0118 319 MobiDBLite consensus disorder prediction 209 250 - -
Gso16g0118 319 Pfam Ring finger domain 107 150 IPR001841 -
Gso16g0118 319 PANTHER RING-H2 FINGER PROTEIN ATL3 3 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0118 Gso-Chr16 1281471 1283077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0118 15 302 C3H Transcription Factor Family AT1G53820 41.100 2.62e-62 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0118 - - gmx:100777158 548.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0412 7 3883350 3885066 Gso16g0118 16 1281471 1283077 GST