Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0114 ATGACCAACCCAAAACTAGGTTATGCCGGAATCTCCGATTCCGGCAACCACATTCCCTCCTCCAAGAAAAACCACAAGAAGCTCCTTCTCTCTCTATTGGCCACCCTCCTCGTGGCGGCCTCCGTGGTGGCCATTGTTGCCGGAGTAAAAAACAAAACCAAAAACTCCGACAACTCCGACACCACCAGCACCTCCCTCTCCCTCTCCCACCACTCGCACGTGATCGTTAAGAGCGCCTGTAGCTCCACATTCTATCCCGAACTCTGCTTCTCCGCCATAGCCTCTGAGCCCAACGTCACTCACAAAGTCACCAACCACCGCGACGTCATCCAACTCTCCCTAAGCATCACCTTCCGCGCGGTGGAGCGCAACTACTTCACCGTGAAGAAACTCCTAACCAAACACGACCTAACGAAACGCGAGACAACCGCGCTCCACGATTGCCTCGAAACCATAGACGAAACCCTCGACGAGCTCAGAGAAGCACAACACGACCTCGAGCTCTACCCTAACAAGAAAACTCTGTACCAGCACGCCGACGATCTCAAAACCCTCATCAGCGCCGCCATAACGAACCAGGTCACGTGCCTCGACGGTTTCTCTCACGATGACGCAGACAAACACGTGAGGAAAGAGTTGGAGAAGGGACAGGTGCATGTGGAACACATGTGCAGCAACGCATTGGCCATGACGAAGAACATGACCGACGGTGACATAGCAAACTACGAATACAAGATGAAAGTGGAAAACACTAACAGCAATAGAAAGTTATTAGTGGAGAATGGTGTTGAGTGGCCGGAGTGGATTTCGGCGGCGGATAGGAGGCTGCTGCAGGCGGCGACGGTGAAGGCGGACGTGACGGTGGCGGCGGACGGGAGCGGGGACTTTAAGACGGTGACGGAGGCGGTGAAGGCGGCTCCGTTGAAGAGTAGTAAGAGGTATGTTATAAGGATTAAGGGTGGGGTGTATAGAGAGAACGTTGAGGTGGATAAGAAGAAGACGAATATCATGTTCTTGGGTGATGGAAGGACCAACACTATCATCACTGCTAGCAGAAATGTTGTTGATGGTAGCACCACCTTCCACTCTGCCACCGTCGCTGTGGTGGGTGCAAATTTCTTGGCCCGGGACATAACATTCCAAAACACAGCGGGCCCATCAAAGCACCAAGCCGTGGCCCTAAGGGTTGGTGGGGACCTCTCAGCATTCTTCAATTGTGACTTCCTAGCATTCCAAGACACCCTTTATGTGCACAACAATCGCCAATTCTTCGTCAAGTGCCTGATTACTGGCACAGTGGATTTCATCTTTGGCAACTCAGCAGTGGTGTTCCAAGACTGTGACATCCACGCCAGGCTTCCTGACTCGGGCCAGAAGAACATGGTCACGGCCCAAGGAAGAGTTGACCCTAACCAAAACACTGGCATTGTGATCCAAAAGTGTAGGATTGGTGCCACTAAGGACTTGGAGTCTGTGAAGAAGAATTTCAAGACTTATCTTGGGAGGCCTTGGAAGGAGTACTCTAGGACTGTGATCATGCAAAGTAGTATAAGTGATGTCATTGACCCAATTGGGTGGCATGAGTGGAGTGGGAATTTTGCATTGAGTACTTTGGTTTATAGGGAGTACCAAAACACTGGGCCTGGTGCTGGTACTTCTAATAGGGTCACTTGGAAAGGGTATAAGGTCATCACTGATGCTGCCGAGGCCAGGGATTATACTCCTGGAAGCTTCATTGGGGGCTCTAGCTGGTTGGGCTCAACTGGGTTTCCTTTCTCTCTTGGTTTGTAA 1791 0.5148 MTNPKLGYAGISDSGNHIPSSKKNHKKLLLSLLATLLVAASVVAIVAGVKNKTKNSDNSDTTSTSLSLSHHSHVIVKSACSSTFYPELCFSAIASEPNVTHKVTNHRDVIQLSLSITFRAVERNYFTVKKLLTKHDLTKRETTALHDCLETIDETLDELREAQHDLELYPNKKTLYQHADDLKTLISAAITNQVTCLDGFSHDDADKHVRKELEKGQVHVEHMCSNALAMTKNMTDGDIANYEYKMKVENTNSNRKLLVENGVEWPEWISAADRRLLQAATVKADVTVAADGSGDFKTVTEAVKAAPLKSSKRYVIRIKGGVYRENVEVDKKKTNIMFLGDGRTNTIITASRNVVDGSTTFHSATVAVVGANFLARDITFQNTAGPSKHQAVALRVGGDLSAFFNCDFLAFQDTLYVHNNRQFFVKCLITGTVDFIFGNSAVVFQDCDIHARLPDSGQKNMVTAQGRVDPNQNTGIVIQKCRIGATKDLESVKKNFKTYLGRPWKEYSRTVIMQSSISDVIDPIGWHEWSGNFALSTLVYREYQNTGPGAGTSNRVTWKGYKVITDAAEARDYTPGSFIGGSSWLGSTGFPFSLGL* 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0114 596 PANTHER PECTINESTERASE 23 595 - -
Gso16g0114 596 ProSitePatterns Pectinesterase signature 2. 429 438 IPR033131 -
Gso16g0114 596 SMART PMEI_2 71 230 IPR006501 GO:0004857
Gso16g0114 596 CDD PMEI-like_3 78 235 - -
Gso16g0114 596 SUPERFAMILY Pectin lyase-like 280 595 IPR011050 -
Gso16g0114 596 ProSitePatterns Pectinesterase signature 1. 310 329 IPR018040 -
Gso16g0114 596 Gene3D Invertase/pectin methylesterase inhibitor family protein 72 235 IPR035513 -
Gso16g0114 596 PANTHER PECTINESTERASE 23 595 - -
Gso16g0114 596 Pfam Pectinesterase 285 581 IPR000070 GO:0030599|GO:0042545
Gso16g0114 596 Pfam Plant invertase/pectin methylesterase inhibitor 76 230 IPR006501 GO:0004857
Gso16g0114 596 TIGRFAM PME_inhib: pectinesterase inhibitor domain 67 234 IPR006501 GO:0004857
Gso16g0114 596 Gene3D - 279 596 IPR012334 -
Gso16g0114 596 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 75 235 IPR035513 -
Gso16g0114 596 Coils Coil 145 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0114 Gso-Chr16 1229329 1235282 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0114 22 596 Carbohydrate Esterase AT3G14310 69.764 0.0 813
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0114 K01051 - gmx:100776623 1117.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0408 7 3838937 3844213 Gso16g0114 16 1229329 1235282 GST