Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0113 ATGGATACAATCAAGTCCTTCAAGGGCTACGGCAAAGTTGACGAGTTGGAGCAGCAAGCCTATCAGAAGAAGACACGTAAGCGCCTCATAATAATCACAGTCTCTTCAATCGTTCTAATTGCGGTGATCATCGCCGCTATCGCAGGGGTTGTCATACACAAGCGCAACACCTCATCATCTCCCTCATCCGACTCGCCCCCGCAAACTGAGTTAACCCCGGCCGCGTCACTCAAAGCGGTTTGCGACGTGACTCAGTACCCTAACTCGTGCTTCTCCGCAATCTCCTCGTTACCGGATTCCAACACTACTGATCCGGAGCTCCTCTTCAAGCTCTCTCTCCGCGTCGCCATTGACGAATTATCCAAGCTCTCGAGCTTTCCTTCGAAGCTCCGCGCTAATGCGGAACACGACGCACGTCTCCAGAAGGCGATCGATGTCTGCGGGAACATTTTTGGCGACGCGCTGGACCGGCTCAACGACTCCATCTCCGCGCTCGGAAGCAGCGGCGGCGCCGGGAAGATTATCTCCCCGGCGAGTGTTAGCGACGTGGAGACGTGGATCAGCGCCGCGCTCACGGACCAGGACACGTGCCTCGACGCGCTCGGAGAGCTGAACTCCACCGCCGCGAGCGGCGCGTTGCGCGAGATCGAAACCGCCATGAGGAACTCCACGGAGTTCGCGAGCAACAGTTTGGCGATTGTCACGAAGATCCTAGGGTTGCTGTCGCAGTTCGCGGCGCCGATTCACCACCGGCGGCTGCTAGGATTTCCGGAGTGGCTCGGGGCGGCGGAGCGGAGGTTGCTTCAGGTGAACAGCAGCGAAACAACGCTGGACGCTGTGGTGGCGCAGGACGGTAGCGGACAGTTCAGGACGATCGGTGAGGCGCTGAAATTAGTGAAGAAGAAGAGCGAGAAGAGGTTCGTGGTGCACGTGAAGGAAGGGCGTTACTTAGAGAACATTGATTTGGATAAGAATACGTGGAATGTGTTTATCTTCGGTGACGGCAAGGACAAAACCGTCGTCGTCGGTAGCCGGAACTTCATGGACGGCACGCCGACTTTCGAAACCGCCACCTTCGCTGTGAAAGGCAAGGGATTCATTGCCAAAGACATAGGTTTTGTGAACAATGCAGGTGCATCTAAGCACCAGGCTGTGGCATTTAGATCTGGTTCGGACCGTTCTGTGTTCTTTAGATGCTCATTCAATGGCTTCCAGGATACCCTCTATGCCCATTCCAATCGCCAGTTCTACCGTGACTGTGACATTACAGGCACCATAGACTTCATATTCGGAAATGCAGCTGCAGTGTTCCAAAACTGCAAAATAATGCCTAGACAGCCTCTACCAAACCAGTTCAACACCATCACAGCTCAGGGCAAGAAGGACCGAAACCAGAACACTGGAATCATAATCCAGAAATCAAAATTCACTCCCTTGGAAAACAATCTCACAGCTCCCACATACCTTGGTAGGCCATGGAAAGATTTCTCCACCACTGTGATCATGCAATCTGATATTGGGTCATTCTTGAAGCCTGTGGGGTGGATGAGTTGGGTCCCCAATGTGGAACCTGTAAGTACCATCTTCTATGCTGAATACCAGAATACTGGGCCTGGAGCTGACGTGTCACAGAGGGTCAAATGGGCTGGGTATAAGCCCACTCTCACGGACGGGGAGGCAGGGAAGTTCACTGTGCAGTCCTTTATCCAAGGCCCTGAGTGGTTGCCCAATGCTGCTGTGCAGTTTGATTCCACCTTGTGA 1761 0.5378 MDTIKSFKGYGKVDELEQQAYQKKTRKRLIIITVSSIVLIAVIIAAIAGVVIHKRNTSSSPSSDSPPQTELTPAASLKAVCDVTQYPNSCFSAISSLPDSNTTDPELLFKLSLRVAIDELSKLSSFPSKLRANAEHDARLQKAIDVCGNIFGDALDRLNDSISALGSSGGAGKIISPASVSDVETWISAALTDQDTCLDALGELNSTAASGALREIETAMRNSTEFASNSLAIVTKILGLLSQFAAPIHHRRLLGFPEWLGAAERRLLQVNSSETTLDAVVAQDGSGQFRTIGEALKLVKKKSEKRFVVHVKEGRYLENIDLDKNTWNVFIFGDGKDKTVVVGSRNFMDGTPTFETATFAVKGKGFIAKDIGFVNNAGASKHQAVAFRSGSDRSVFFRCSFNGFQDTLYAHSNRQFYRDCDITGTIDFIFGNAAAVFQNCKIMPRQPLPNQFNTITAQGKKDRNQNTGIIIQKSKFTPLENNLTAPTYLGRPWKDFSTTVIMQSDIGSFLKPVGWMSWVPNVEPVSTIFYAEYQNTGPGADVSQRVKWAGYKPTLTDGEAGKFTVQSFIQGPEWLPNAAVQFDSTL* 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0113 586 PANTHER PECTINESTERASE 8 583 - -
Gso16g0113 586 TIGRFAM PME_inhib: pectinesterase inhibitor domain 63 237 IPR006501 GO:0004857
Gso16g0113 586 SMART PMEI_2 72 233 IPR006501 GO:0004857
Gso16g0113 586 ProSitePatterns Pectinesterase signature 2. 422 431 IPR033131 -
Gso16g0113 586 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 77 238 IPR035513 -
Gso16g0113 586 SUPERFAMILY Pectin lyase-like 277 583 IPR011050 -
Gso16g0113 586 CDD PMEI-like_3 79 237 - -
Gso16g0113 586 Pfam Pectinesterase 278 571 IPR000070 GO:0030599|GO:0042545
Gso16g0113 586 Gene3D - 272 586 IPR012334 -
Gso16g0113 586 Gene3D Invertase/pectin methylesterase inhibitor family protein 75 238 IPR035513 -
Gso16g0113 586 PANTHER PECTINESTERASE 1-RELATED 8 583 - -
Gso16g0113 586 Pfam Plant invertase/pectin methylesterase inhibitor 77 233 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0113 Gso-Chr16 1223310 1226420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0113 1 580 Carbohydrate Esterase AT1G53840 58.179 0.0 682
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0113 - - gmx:100784642 1117.83