Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0105 ATGTTTCCGTTTCATTCTCAAGGAACTCCGAAACACACTTGCACTCTTCTCGCTGTGACCTGCAGAACAAGTTCCGCTGAGCACAAACTCTCACATGCTCAGCGCACATATCCTTTCCCTGAGTTAGTTTCCGCGGGGCGTCTTGAGGTTCAAACTCTTTGCAGTCCGGAGAAGGAACAGTTTCGGAAAGTTCTGGAGTCGTTTCAACCGAATTTTGTTTACTTGCGAGGAGACCAGCTAGAGAATGGGGAAGTAGGTTCGCTGGTTTGGCAGGGTGTGGAATTATCCACTTGTGAAGATATAACAGAGCTCTTTGGTTCCACATTGCCAACGGCTGTTTATTTAGAAATACCAAATGGAGAAAGTTTTGCAGAGGCTCTTCATCTTAAGGGAATCCCATATGTTATATTTTGGAAGAATACCTTCTCTTGTTATGCTGCCTGCCATTTTCGTCAAGCATTTCTTTCAGTAGTACAAAGTTCATCTACACATACATGGGATGCTTTCCACCTTGCACGTGCCTCTTTTGAACTTTACTGTGTCCAAAACAATCAAGTACTTCCTTCTGATAGCGATGATGCTAGTAGTGAGATGGGGCCACACCTTCTTGGCGACTGTCTCAAAATCAATGTCGACCCTCCAGAGATCGATGAAGAGGATGATGACGAAAGTTCCTCAGGAAGTTTGCCTGCCATAAAGATACATGAGGATGAAGTGAACTTGAGATTTCTCATCTGTGGTGCACCTTCGACTGTTGATGAGTCATTGCTGAGATCTTTGGAGGATGGACTCAGAGCTCTCTTAACTATTGAAATACGTGGTTGCAAGCTCCATGGCAAGTTTAGTGCCCCACCACCACCTCTTCAGGCAGCCGCTTTTTCTCGCGGAGTTGTGACCATGCGATGTGATATATCAACCTGTAGTTCTGCACATATCTCACTTCTGGTATCCGGCAGTGCACAAACTTGTTTTAATGATCAGCTCTTGGAGAATCATATAAAAAATGAGATAATTGAGAAGAGTCAACTAGTTCACGCACAACTCAACAATGAGGGAAACAAAGAGAACATCTGTGAACCTCGCAGATCTGCTTCTATTGCCTGTGGAGCATCTGTATTTGAAATTTGCATGAAGCTACCTCAATGGGCTTTGCAGATTTTGAGACAGCTAGCACCTGAGGTTTCTTATCGAAGTTTAGTTGCACTTGGCATTGCTAGTATTCAGGGGTTGCCTATAGCTTCTTTTGAGAAAGATGATGCTGAACGCTTACTGTTCTTCTATCAAAACTGTGAGAAAGATAGCTGTACAAACAAAAATAATATAATTTTTAGCAGTCCCCCTGGTTGGTTGAAACCACCCCCTCCTACTAGGAAAAGGTGTGAACCAAGACAAGAGGCTAGCCCTGGTCTTCATGAAGGTGTCTTTGCAGGGCAGGGTGGTGTTTGTAAATTAAATGAAGAGGAAAAGGACAGAAAAATTGTCAATGGGATTAGCATGCCGTTAACTCCTGCTAGGCAGAGATTAAAAGTATCTGCAATGAGGCCAATTCCTCACATTCGTCGCCATAGAATGACACCTTTTTGTGGGCCTTCTGAGACAGATGGTTTTGATGGCACTCAGGTAGAGGCTATTTTGCCACTTGTTGCCCCTACGAAGCGTACTAGTATTGGATCAACATCTGGAACACACAGAAAATCATTTTCAAGTGCAGCTCAGTCTAAGCAGGTTATTTCATTGAACCCATTGCCTCTTAAGAAACATGGTTGTGGTAGAGGCCCAGTACAGACATGCTCTGAGGAGGAATTTCTTAAAGATGTCATGGAGTTTCTGATTCTCCGGGGACATAATAGACTGATTCCTCAAGGAGGGCTTACCGAGTTCCCTGATGCCATACTCAATGGAAAACGCCTTGATCTCTACAATCTATATAAAGAGGTGGTTACCAGGGGAGGATTTCATGTTGGCAATGGCATCAACTGGAAGGGACAAATCTTTTCAAAGATGCGCAATTACACAACAACCAATAGAATGACTGGTGTTGGGAATACTCTCAAGCGACATTATGAGACCTACCTTTTAGAATATGAATTAGCACATGATGATGTGGATGGAGAATGTTGCTTGTTGTGTCACAGTAGTGCAGCTGGTGATTGGGTGAATTGTGGCATATGTGGTGAATGGGCCCACTTTGGCTGTGACAGAAGGCAGGGTCTTGGTGCATTTAAGGATTATGCAAAAACAGATGGGCTAGAATATATATGTCCTCATTGTAGTGTTACAAATTTCAAGAAGAAACAAAATGTTGCTAATGGGTATTCTCAAGGGTCAATGTCTTCACGACCCCTTTGA 2349 0.4338 MFPFHSQGTPKHTCTLLAVTCRTSSAEHKLSHAQRTYPFPELVSAGRLEVQTLCSPEKEQFRKVLESFQPNFVYLRGDQLENGEVGSLVWQGVELSTCEDITELFGSTLPTAVYLEIPNGESFAEALHLKGIPYVIFWKNTFSCYAACHFRQAFLSVVQSSSTHTWDAFHLARASFELYCVQNNQVLPSDSDDASSEMGPHLLGDCLKINVDPPEIDEEDDDESSSGSLPAIKIHEDEVNLRFLICGAPSTVDESLLRSLEDGLRALLTIEIRGCKLHGKFSAPPPPLQAAAFSRGVVTMRCDISTCSSAHISLLVSGSAQTCFNDQLLENHIKNEIIEKSQLVHAQLNNEGNKENICEPRRSASIACGASVFEICMKLPQWALQILRQLAPEVSYRSLVALGIASIQGLPIASFEKDDAERLLFFYQNCEKDSCTNKNNIIFSSPPGWLKPPPPTRKRCEPRQEASPGLHEGVFAGQGGVCKLNEEEKDRKIVNGISMPLTPARQRLKVSAMRPIPHIRRHRMTPFCGPSETDGFDGTQVEAILPLVAPTKRTSIGSTSGTHRKSFSSAAQSKQVISLNPLPLKKHGCGRGPVQTCSEEEFLKDVMEFLILRGHNRLIPQGGLTEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMRNYTTTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSVTNFKKKQNVANGYSQGSMSSRPL* 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0105 782 Pfam ARID/BRIGHT DNA binding domain 599 696 IPR001606 GO:0003677
Gso16g0105 782 SMART ARID_2 593 696 - -
Gso16g0105 782 SUPERFAMILY ARID-like 596 711 IPR036431 GO:0003677
Gso16g0105 782 CDD PHD_ARID4_like 706 757 - -
Gso16g0105 782 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 5 772 IPR042293 -
Gso16g0105 782 Gene3D - 594 699 IPR036431 GO:0003677
Gso16g0105 782 SUPERFAMILY FYVE/PHD zinc finger 692 760 IPR011011 -
Gso16g0105 782 SMART bright_3 597 701 IPR001606 GO:0003677
Gso16g0105 782 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 700 763 IPR013083 -
Gso16g0105 782 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 5 772 - -
Gso16g0105 782 MobiDBLite consensus disorder prediction 446 471 - -
Gso16g0105 782 CDD ARID 598 696 - -
Gso16g0105 782 ProSiteProfiles ARID domain profile. 596 700 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0105 Gso-Chr16 1140744 1148310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0105 4 771 ARID Transcription Factor Family AT3G43240 60.696 0.0 936
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Gso16g0105 ARID 2.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0105 - - gmx:100816540 1580.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0398 7 3760403 3767974 Gso16g0105 16 1140744 1148310 GST