Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0102 ATGTGTGGTGGTGCGATTATCTCCGACTTCATACCGGCAGGTCCCGCCAGCGGGGCGCGGCGCGTGACCGCCGACATCCTGTGGCCGAGTTTGAGGAAGCGCTTCTCGAAGCCGCTGCTGGACGATGATTTCGAGGCTGGGTTCAGAGAATTCAAGGATGATTCGGAAATCGAGGATGTTGATGACGAGGACGATGAAGACGAGGAGGAGTTGAAGAAGAAGCCCTTTGGGTTCTCTCGCTCCAGCAACAAGGCTGCTTCTAAGCCTCTCTCTCGTGGATCAGCAACTGTGGAATCAAAGGGGCAAGCTGAGAAGTGTGCCAAGAGAAAGAGGAAGAACCAGTATCGTGGAATCCGTCAGCGTCCATGGGGAAAGTGGGCTGCTGAGATCCGTGACCCAAGAAAGGGGGTTCGTGTTTGGCTTGGAACTTTCAGCACTGCTGAAGAAGCTGCAAGAGCTTATGATGCTGAAGCAAGGAGGATCCGGGGCAAGAAAGCCAAGGTGAATTTCCCGGATGAGCCTTCAGGCGCTGCTGCTTCCTCAAAACGCCTCAAGGTGAATCCAGAGGCTCAGCCAATGAAGGAAAATCTGAACACCGTGAAGCCGAAAATGAACCAGATGTTCAATTTTGGTCACAATCTGGAGGGCTACTACAGCCCAATAGATCAGGTGGAACAGAAACCACTGGTTAACCAGTATGTTAACCCTGCCCCGTTCCCTGGAAACGGAGTTCAAGTCTCACCTGTTACTCCATCTGCTGATGTTACTGCTTACTTCAGCTCTGAGCATTCGAGCAACTCGTTTGATTATTCTGACCTTGGATGGGGTGAACAAGTCCCCAAGACCCCCGAGATCTCATCCTTGCTTTCTGCTGCTCCTTTGGAGGGTGCTGCTGATCAGGTTCAGAAGACCAACAACTCGCAGGATGTGGTGGCTGCACAAGATGATTCTGCAAAAACCCTTTCCGAAGAGCTTGCAGACATTGAATCCCAGCTCAAGTTCTTTGAGACCCCTTCTTTTCTTGATGAAGCCTGGGCTGATGCTACATTGGCGTCTTTGCTCGGCGGAGACGCAACTCATGACGCCGCCGGAAACCCTATGAACCTTTGGAGCTTCGACGACCTGCCTTCCATGGCAGGAGTCTTCTGA 1149 0.5231 MCGGAIISDFIPAGPASGARRVTADILWPSLRKRFSKPLLDDDFEAGFREFKDDSEIEDVDDEDDEDEEELKKKPFGFSRSSNKAASKPLSRGSATVESKGQAEKCAKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFSTAEEAARAYDAEARRIRGKKAKVNFPDEPSGAAASSKRLKVNPEAQPMKENLNTVKPKMNQMFNFGHNLEGYYSPIDQVEQKPLVNQYVNPAPFPGNGVQVSPVTPSADVTAYFSSEHSSNSFDYSDLGWGEQVPKTPEISSLLSAAPLEGAADQVQKTNNSQDVVAAQDDSAKTLSEELADIESQLKFFETPSFLDEAWADATLASLLGGDATHDAAGNPMNLWSFDDLPSMAGVF* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0102 382 CDD AP2 114 172 IPR001471 GO:0003700|GO:0006355
Gso16g0102 382 Gene3D AP2/ERF domain 113 172 IPR036955 GO:0003700|GO:0006355
Gso16g0102 382 PANTHER EREBP TRANSCRIPTION FACTOR 1 377 - -
Gso16g0102 382 SMART rav1_2 114 177 IPR001471 GO:0003700|GO:0006355
Gso16g0102 382 Coils Coil 311 331 - -
Gso16g0102 382 SUPERFAMILY DNA-binding domain 114 172 IPR016177 GO:0003677
Gso16g0102 382 ProSiteProfiles AP2/ERF domain profile. 114 171 IPR001471 GO:0003700|GO:0006355
Gso16g0102 382 PRINTS Ethylene responsive element binding protein signature 115 126 IPR001471 GO:0003700|GO:0006355
Gso16g0102 382 PRINTS Ethylene responsive element binding protein signature 137 153 IPR001471 GO:0003700|GO:0006355
Gso16g0102 382 MobiDBLite consensus disorder prediction 55 69 - -
Gso16g0102 382 MobiDBLite consensus disorder prediction 80 98 - -
Gso16g0102 382 Pfam AP2 domain 114 163 IPR001471 GO:0003700|GO:0006355
Gso16g0102 382 MobiDBLite consensus disorder prediction 53 118 - -
Gso16g0102 382 PANTHER DNA-BINDING DOMAIN 1 377 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0102 Gso-Chr16 1095688 1099172 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0102 1 378 AP2-EREBP Transcription Factor Family AT3G14230 43.552 2.41e-61 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso16g0102 AP2 4.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0102 K09286 - gmx:547957 731.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0391 7 3691079 3694488 Gso16g0102 16 1095688 1099172 GST