Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0098 ATGGCCACCACCACCAACGCCGCCGCAGCCCCGCCGCGCCAGCTCTCCCAGAAGGAAGCCGACATCCAGATGATGTTAGCCGCCGACGTCCACCTCGGCACCAAAAACTGCGACTTCCAAATGGAACGTTACATCTTCAAGCGCCGCAACGACGGGATTTACATTATTAACCTTGGGAAGACATGGGAGAAGCTTCAGTTAGCAGCTAGGGTTATTGTTGCAATTGAGAACCCTCAGGATATCATTGTTCAATCCGCAAGGCCTTATGGTCAAAGAGCGGTTCTGAAGTTTGCTCAGTACACTGGTGCTCATGCTATTGCTGGAAGGCACACTCCCGGTACCTTCACCAATCAGCTTCAGACTTCGTTCAGTGAGCCTCGTCTCCTTATCCTCACTGATCCAAGAACAGATCACCAGCCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGACACTGATTCGCCTATGAGGTATGTGGACATTGGAATTCCTGCCAACAACAAGGGAAAACACAGCATTGGTTGTCTCTTTTGGCTCCTTGCAAGGATGGTATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGGTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAGGAGGAAGCTCCGGCAGGTGATTATGCCATCACAGATTTCAATGCAGGTGCTATTGCTGCTGATGGCCAGTGGCCTGGTACAATTGATCAATCATGGAGTGATGCAGTTCCACAACCTATTCCAGCAGCACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGCTGTTGCAGAAGGAGATTGGGGTGAAGCTGTTCCACCACCACAACAAATCCCTGTTCCTCCCTCTGGAATTGACTCTGTCCAACCAACTGGCTGGGAATAA 936 0.5053 MATTTNAAAAPPRQLSQKEADIQMMLAADVHLGTKNCDFQMERYIFKRRNDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKQQEEEEAPAGDYAITDFNAGAIAADGQWPGTIDQSWSDAVPQPIPAAPGVNWGAPAEAPAAVAEGDWGEAVPPPQQIPVPPSGIDSVQPTGWE* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0098 311 TIGRFAM uS2_euk_arch: ribosomal protein uS2 17 213 IPR005707 GO:0003735|GO:0006412|GO:0015935
Gso16g0098 311 PANTHER 40S RIBOSOMAL PROTEIN SA 13 285 - -
Gso16g0098 311 PANTHER 40S RIBOSOMAL PROTEIN SA 13 285 IPR005707 GO:0003735|GO:0006412|GO:0015935
Gso16g0098 311 Gene3D - 21 227 - -
Gso16g0098 311 CDD RPS2 25 191 IPR001865 GO:0003735|GO:0005840|GO:0006412
Gso16g0098 311 SUPERFAMILY Ribosomal protein S2 17 207 IPR023591 -
Gso16g0098 311 MobiDBLite consensus disorder prediction 246 311 - -
Gso16g0098 311 Hamap 40S ribosomal protein SA [rps-0]. 9 257 IPR027498 GO:0003735|GO:0006412|GO:0015935
Gso16g0098 311 Pfam Ribosomal protein S2 124 189 IPR001865 GO:0003735|GO:0005840|GO:0006412
Gso16g0098 311 Pfam Ribosomal protein S2 25 119 IPR001865 GO:0003735|GO:0005840|GO:0006412
Gso16g0098 311 ProSitePatterns Ribosomal protein S2 signature 2. 126 150 IPR018130 GO:0003735|GO:0005840|GO:0006412
Gso16g0098 311 PRINTS Ribosomal protein S2 signature 22 40 IPR001865 GO:0003735|GO:0005840|GO:0006412
Gso16g0098 311 PRINTS Ribosomal protein S2 signature 52 61 IPR001865 GO:0003735|GO:0005840|GO:0006412
Gso16g0098 311 PRINTS Ribosomal protein S2 signature 101 118 IPR001865 GO:0003735|GO:0005840|GO:0006412
Gso16g0098 311 PRINTS Ribosomal protein S2 signature 126 143 IPR001865 GO:0003735|GO:0005840|GO:0006412
Gso16g0098 311 PRINTS Ribosomal protein S2 signature 143 154 IPR001865 GO:0003735|GO:0005840|GO:0006412
Gso16g0098 311 PRINTS Ribosomal protein S2 signature 164 178 IPR001865 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0098 Gso-Chr16 1047681 1049777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0098 6 283 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 75.972 2.54e-152 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0098 K02998 - gmx:100805318 613.224
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0387 7 3627497 3629717 Gso16g0098 16 1047681 1049777 GST