Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0092 ATGGCCGATGAAGGAAACAAAAGCAATAACTTCTATTCGATCTTGGGGTTGAAGAAGGAGTGCACTGAATTGGAGCTAAAGAATGCTTATAGGAAACTTGCAAAGAAATGGCACCCAGATCGTTGTTCAGCGACCGGGAATTCAGAGTTAGTGGAAGAAGCTAAGAAAAAATTTCAGGAAATTCGGGAAGCCTATTCAGTTTTATCTGACGCCAACAAAAGGTTAATGTACGACGTGGGAGTCTACGACAGTGATGACGACGAGAACGGCATGGGGGACTTCTTGGACGAAATGCTAACAATGATGAGTCAGACCAAATCGAATGAAAACGGAGAGGAGAGCTTTGAGGAGTTGCAACAGTTGTTTGAAGACATGTTTGAAGCAGATATTGGATTGGACGGAGGCCCTTCTCTTGCTTCTTCTGATTGCTCAACTTCATCTGCTTACATGACTTATAGTGAAAGTTCTAGTTCAAATAAACACAATTCCTCTGAGATGAATTTCGGGAAGGCAGAGAATTCTTCTGTCTTTGATGCTGGTTACCAGAATTTCTGTTTTGGGGTGAACCAACTCCAAGATATAAAGAAGAAAAAGGGGGGAATTCTAGGAGGAGGTAGAAGTAGACACAGAAATGGCAGAAAGCAAAATATGTCCTATGGCCATGATGTTTCATCGAATGACTACCCTGGAATTTCCACAAAGTAA 705 0.4184 MADEGNKSNNFYSILGLKKECTELELKNAYRKLAKKWHPDRCSATGNSELVEEAKKKFQEIREAYSVLSDANKRLMYDVGVYDSDDDENGMGDFLDEMLTMMSQTKSNENGEESFEELQQLFEDMFEADIGLDGGPSLASSDCSTSSAYMTYSESSSSNKHNSSEMNFGKAENSSVFDAGYQNFCFGVNQLQDIKKKKGGILGGGRSRHRNGRKQNMSYGHDVSSNDYPGISTK* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0092 234 PRINTS DnaJ domain signature 12 30 IPR001623 -
Gso16g0092 234 PRINTS DnaJ domain signature 30 45 IPR001623 -
Gso16g0092 234 PRINTS DnaJ domain signature 53 73 IPR001623 -
Gso16g0092 234 PRINTS DnaJ domain signature 73 92 IPR001623 -
Gso16g0092 234 ProSitePatterns Nt-dnaJ domain signature. 58 77 IPR018253 -
Gso16g0092 234 MobiDBLite consensus disorder prediction 198 234 - -
Gso16g0092 234 ProSiteProfiles dnaJ domain profile. 10 81 IPR001623 -
Gso16g0092 234 PANTHER PUTATIVE, EXPRESSED-RELATED 1 228 - -
Gso16g0092 234 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 1 228 - -
Gso16g0092 234 Coils Coil 51 71 - -
Gso16g0092 234 SUPERFAMILY Chaperone J-domain 8 93 IPR036869 -
Gso16g0092 234 CDD DnaJ 10 70 IPR001623 -
Gso16g0092 234 Pfam DnaJ domain 10 78 IPR001623 -
Gso16g0092 234 MobiDBLite consensus disorder prediction 217 234 - -
Gso16g0092 234 SMART dnaj_3 9 73 IPR001623 -
Gso16g0092 234 Gene3D DnaJ domain 7 134 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0092 Gso-Chr16 1005321 1008908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0092 12 78 C2H2 Transcription Factor Family AT1G74250 45.588 2.25e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0092 - - gmx:100791192 442.965