Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0090 ATGGACGACGACGACGAGATCCAGTCGCATCCTTCGCCGGCGAGCGGATCCCCTCCGTCGTCGCCGAGGTCGAACGGTCGGATAACGGTGACGGTCGCGGCTCCGGCGCCGCAGGCGCAGCCACCACCGCCGAATAGTCTGGCATTAGCGCTTCCGATTCAGCAGCCGGCGAAGGGGAACGGCGGAGGAGGAGGAGGAGGAGGAGGCGGTGGAGGGAGGGAGGATTGCTGGAGCGAAGGCGCGACGGCGGTGCTGATCGACGCGTGGGGAGAGAGGTATCTGGAACTGAGCAGAGGAAATCTGAAGCAGAAGCACTGGAAGGAGGTGGCGGAGATCGTGAGCGGACGAGAGGATTTCACGAAGGCGCCGAAGACAGATATCCAGTGCAAAAACCGGATCGACACCGTTAAGAAGAAGTACAAATCGGAGAAGGCGAAGATCGCCGCCGGTGCCACCAGCAAGTGGCCGTTCTACGACCGATTGGAACAATTAATTGGTCCTAGCGCCAAGATCCCCGGCGCCGGAAACAGTAATTCACAACCGCAGAAAGTTCCGTTAGGGATTCCGGTCGGTGTTCGCAGCAGCGCGAATCAGTTTCACCATCCTCACAAACAGCCACAGAGGCAGCAACCACAATCGGTTCCGTTGAAGAACCAGAAGATTCAGTTCCGGCGCCGCGGTCCTCCGGTGGATTCCGATTCGGAGGAGCGCGACGCGTCGTCGCCGGCGTCGAGCGACAGTTTTCCGCCGGAGAGCTTCGAGCGGAAGAGGCCGCGGTTGATGAGTTCTAACACCGCGAAAGGAAGCGGAGAAAGACGGAAGGCGAAGGGTTGGGGAAGCGCGGTGAGGGAACTGACTCAGGCGATTCTGAAATTCGGTGAGGCTTATGAACAAGCAGAGAGTTCGAAGCTGCAGCAGGTGGTGGAGATGGAGAAGCAGAGGATGAAGTTCGCGAAGGATTTGGAGTTGCAGAGAATGCAGTTTTTCTTGAAGACGCAGCTGGAGATTTCGCAGCTCAAGCTTGGAAGGAAAGGTGGTAACCCTAGCAACAATCTCAATGGCACCACCAACAATAACAACAACAATCATAACAATAATAGTGACAGTGAATGA 1113 0.5714 MDDDDEIQSHPSPASGSPPSSPRSNGRITVTVAAPAPQAQPPPPNSLALALPIQQPAKGNGGGGGGGGGGGGREDCWSEGATAVLIDAWGERYLELSRGNLKQKHWKEVAEIVSGREDFTKAPKTDIQCKNRIDTVKKKYKSEKAKIAAGATSKWPFYDRLEQLIGPSAKIPGAGNSNSQPQKVPLGIPVGVRSSANQFHHPHKQPQRQQPQSVPLKNQKIQFRRRGPPVDSDSEERDASSPASSDSFPPESFERKRPRLMSSNTAKGSGERRKAKGWGSAVRELTQAILKFGEAYEQAESSKLQQVVEMEKQRMKFAKDLELQRMQFFLKTQLEISQLKLGRKGGNPSNNLNGTTNNNNNNHNNNSDSE* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0090 370 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 1 340 - -
Gso16g0090 370 Coils Coil 360 370 - -
Gso16g0090 370 MobiDBLite consensus disorder prediction 343 370 - -
Gso16g0090 370 Pfam Myb/SANT-like DNA-binding domain 74 164 IPR044822 -
Gso16g0090 370 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 1 340 IPR044823 -
Gso16g0090 370 MobiDBLite consensus disorder prediction 10 28 - -
Gso16g0090 370 MobiDBLite consensus disorder prediction 167 280 - -
Gso16g0090 370 MobiDBLite consensus disorder prediction 198 219 - -
Gso16g0090 370 MobiDBLite consensus disorder prediction 224 240 - -
Gso16g0090 370 Gene3D - 77 142 - -
Gso16g0090 370 MobiDBLite consensus disorder prediction 341 370 - -
Gso16g0090 370 MobiDBLite consensus disorder prediction 1 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0090 Gso-Chr16 989235 991104 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0090 1 351 Trihelix Transcription Factor Family AT3G14180 46.712 1.91e-102 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Gso16g0090 Myb_DNA-bind_4 2e-25 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0090 - - gmx:100782874 573.548