Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0088 ATGGCTGCTGATTCTTTCTCCTTTGAGGGTGACTCCTTCTCAAGCCACCAGAGAAGACACTATCCAACACCAGTGAGTTATCACACTGTGTATGGCTCTGGCTCTGGCTCTTTCATATCATCCAGCTCTCTAACCAATCCAAGAGCTCGCCGCCGCAACCCAGTTCCTGCCACACCCTTTGCTTCAGATGATGACCATTCATGGCAAGGAGAAGTTTCGTGGAAGTTCGAGGCCACCGGGTGGCGCGACTATAGCACAAACTTTGGTTCTGTTCTCAGTCCATGGCCAGAGAGCTCCCCTTCTGGTCACAGCCGGGTATTTCGTCGATCAGCCAATGATTACTACCTTTCAAGAACAAGTAGGTTCAGAGGTCTTGCAAACTCTTCTTATGAACAATCTGGCTATGGTAGAGTTGAACTTCAGAGCTATGATGCTAGGGACAATGATTATAGTTACTTTGATCAGCATAGTCGGCCACAAGGATTATCAAGATCGGGGTTCATCCAAGAGAAGAGTAGTAAAAAATGTAAGACTAGTCCATTGGCTGAGGAAGATGAGCTTAGTATGATAGATTATAGCATAACACATGATCACGTTATTTCACCTAATAGGAATGGTCATGGTCTTGAATTACCATATTCTAAACATGGTCATGGTGGTGATTATGGTGGGAATTATCATGTTGGTCATGATGGACCATCATCACACGGTAGCCAAATTTATAGAAGTGGTGGGGATTACACTTATAGTCACCATGACATTGAGAAGCTTTCAGCATATGATGAAGAGGGTGAAGAGGATATGGATGAGGAAGATGCAAGGCCTCCAAAGACTGTTGGGATTTTTAGCTTGTTTAAGTACTCAACAAAGTTGGATTTGGTGCTTGTGTTTGTGGGGTGTTTAGGGGCTCTCATAAATGGAGGATCGCTTCCTTGGTATTCTTATCTTTTTGGAGATGTTGTCAATAAGATCTCAGAAGCTGAAAATGACAAAGCACAGATGATGAAGGATGTAGAGAGGATATGCAAATTTATGGCCGGGCTAGCTGCTGTTGTGGTATTTGGAGCATATTTGCAGATCACATGTTGGAGGTTAGTGGGGGAGCGTGCTGCTCAAAGAATTAGAACAGAGTATCTAAGAGCGGTTCTTCGACAGGACATTACTTTTTTTGATACAGATATCAACACTGGTGATATTATGCATGGAATTGCTAGTGATGTTGCACAGATTCAAGAAGTTATGGGAGAGAAGATGGCCCACTTCATTCATCATATATTTACATTCATATGTGGGTATGCAGTTGGGTTTAAAAGATCATGGAAAGTCTCTCTGGTGGTATTCTCAGTCACTCCATTGACAATGTTCTGTGGCATGGCTTACAAAGCACTTTATGGTGGCCTAACAGCAAAAGAGGAAGCTTCTTATAGGAAAGCTGGTAGCATTGCGGAGCAGGCCATCAGTTCAATTAGGACAGTGTTTTCATTTGTTGCAGAAAGCAAATTGGCAGGAAAATATGCTGAGCTACTGCAGAAATCAGCTCCAATAGGGGCCAGAGTTGGTTTTGCTAAAGGTATTGGCATGGGAGTGATCTACTTAATAACCTATTCAACATGGGCACTGGCTTTCTGGTATGGCTCTGTATTAATTGCCAGGAATGAACTTGATGGAGGTTCAGCTATTGCTTGTTTCTTTGGTGTCAATGTAGGGGGAAGAGGGTTGGCACTGGCACTTTCATATTTTGCACAATTTGGTCAAGGGACTGTTGCAGCAAGCCGTGTATTCTATATTATAGAGAGAATCCCTGAGATTGATTCCTATAGCCCTGAGGGTAGGAAGCTTTCTGGTGTTCGTGGAAGGATTGAGTTAAAAAGTGTTAGCTTTGCATACCCATCTCGTCCTGATTCTCTTATACTTCATTCCCTTAACTTGGTGTTACCATCTTCAAAAACTGTGGCATTGGTTGGTGCCAGTGGTGGGGGAAAGTCTACTATCTTTGCTCTCATAGAGAGGTTTTATGATCCTATTGAAGGAATTATTACCTTGGATGGTCATGATTTGAGGACATTGCAAGTAAAGTGGCTACGAGATCAGATTGGGATGGTTGGTCAGGAGCCAATTCTCTTTGCCACATCTATTCTGGAAAACGTGATGATGGGGAAAGATAATGCCACAAAGAAAGAGGCAATTGCTGCTTGCATTGCTGCCGATGCTCACAGCTTCATCTCTAGCCTACCACTAAGCTATGACACTCAGGTAGGGGACAGGGGTACAAAACTCTCAGGGGGCCAAAAGCAGAGAATTGCTTTGGCTCGAGCAATGGTCAAAGATCCAAAAATCCTTCTTCTAGATGAACCTACTAGTGCTCTTGATGCCGAGTCAGAGTCTGCGGTCCAAAGGGCCATCGACAAGATATCTGCAAGCCGAACAACCATTGTAATTGCTCACAGGATAGCAACAGTGAAGAATGCTCATGCTATTGTGGTTCTTGAGCATGGTTCTGTCACTGAGATCGGTGACCATCGCCAGCTTATGGCGAAAGCAGGAGCATACTACAACCTTGTCAAGCTTGCCACCGAAGCCATTTCAAAACCTCTAGCTATAGAAAATGAAATGCAAAATGCTAATGATTTATCCATCTATGATAAACCCATTTCTGGTTTATCAGGATCAAGATATTTAGTTGATGATATTGATATCCCATGGCCTAAAGGCTTAAAATCCACGCAGGAGGAGGAGGAGAAGAAACATCAAGACATGGAAGACAAGCAAGACAAAATGGCAAGAAAATACAGTCTTTCTGAAGTATGGAAACTGCAAAAGCCTGAGTTTGTGATGCTATTTTCAGGACTTATTCTGGGAATGTTTGCTGGTGCTATTCTGTCCCTTTTCCCATTGGTTTTAGGCATATCCTTGGGAGTATATTTTGGCCACGACACTCATAAGATGAAAAGAGATGTGGGGCGCCTTTGTTTAACACTTGTTGGCCTTGGATTTGGTTGCATACTTTCCATGACAGGACAACAAGGTTTCTGTGGTTGGGCAGGATCAAAGCTGACACAAAGGGTTAGAGACCTCTTGTTTCAATCCATTCTGAAACAAGAACCTGGGTGGTTTGACTTTGAAGAAAACTCCACAGGAGTGTTGGTGTCAAGGCTCTCATTAGACTGTGTTAGTTTTCGATCGGTGCTTGGCGACAGATTCTCAGTCCTTCTTATGGGATTGAGTTCTGCTGCTGTTGGCCTTGGTGTGTCCTTTGCCTTTAACTGGAGACTAACCCTTGTAGCAGCTGCTGTAACTCCTTTCGCGCTCGGTGCAAGCTACATAAGCTTGATCATAAACGTTGGACCGCGAGTGGATAACGACTCTTATGCGAAAGCTAGTAACATTGCTTCTGGTGCAGTGTCAAACATAAGGACAGTTACTACATTTTCTGCACAGGAGCAGATAGTTAAGTCCTTTGATAGAGCCCTGTCAGAACCTAGGAGAAAATCATTGAGAAGTTCACAACTTCAAGGTCTTATGTTTGGGTTGTTTCAAGGTTCCATGTATGGAGCATACACCTTAACTCTTTGGTTTGGTGCATACCTTGTAGAACACGACAAGGCAAAACTTGGAGACGTGTTTAAGATCTTTCTCATTCTTGTTCTGAGCTCATTTTCAGTGGGACAACTTGCCGGTTTGGCACCAGATACTACTATGGCGGCGGCAGCGATTCCTGCAGTTCAAGATATCATAAAACGTAGGCCACTGATTGACAATGATAGAACAAAAGGTAGGATAGTAGACCGATCGAAGCGGTTCAACATAGAATTCAAGATGGTGACATTTGCATACCCATCTAGGCCAGAGGTGACTGTGTTGAGGGATTTCTGTTTAAAGGTCAAAGGTGGAAGCACAGTGGCATTGGTGGGACCAAGCGGATCAGGGAAGTCAACAGTCATATGGTTGACTCAGAGGTTCTATGATCCTGATCAAGGAAAGGTGATGATGAGTGGGATCGATTTGAGGGAGATTGATGTGAAGTGGTTGAGGAGGCAAATGGCTTTGGTGGGTCAAGAACCTTCATTGTTTGCTGGGAGCATAAGGGAAAATATTGCATTTGGGGACCCAAATGCTTCGTGGACTGAAATTGAAGAGGCTGCAAAGGAGGCTTACATCCACAAGTTCATCAGTGGCCTTCCTCAAGGTTATGAAACCCAGGTTGGTGAAAGTGGGGTCCAATTATCAGGTGGCCAGAAACAAAGAATTGCTATAGCAAGGGCCATATTGAAGAAATCAAGGGTGCTTTTGCTTGATGAAGCAAGCAGTGCCTTGGACTTGGAATCGGAGAAGCACATCCAAGAAGCCCTTAAGAAGGTTACCAAAGAGGCAACAACCATAATAGTTGCTCACCGTCTTTCCACAATCAGAGAAGCGGACAAGATTGCAGTTATGAGAGATGGGGAAGTGGTGGAGTACGGGAGCCATGACAATCTCATGGCTTCAAATCAAAATGGCTTGTATGCTTGCCTAGTTCGAGCAGAGACTGAAGCCAATGCCTTTGCTTGA 4548 0.4393 MAADSFSFEGDSFSSHQRRHYPTPVSYHTVYGSGSGSFISSSSLTNPRARRRNPVPATPFASDDDHSWQGEVSWKFEATGWRDYSTNFGSVLSPWPESSPSGHSRVFRRSANDYYLSRTSRFRGLANSSYEQSGYGRVELQSYDARDNDYSYFDQHSRPQGLSRSGFIQEKSSKKCKTSPLAEEDELSMIDYSITHDHVISPNRNGHGLELPYSKHGHGGDYGGNYHVGHDGPSSHGSQIYRSGGDYTYSHHDIEKLSAYDEEGEEDMDEEDARPPKTVGIFSLFKYSTKLDLVLVFVGCLGALINGGSLPWYSYLFGDVVNKISEAENDKAQMMKDVERICKFMAGLAAVVVFGAYLQITCWRLVGERAAQRIRTEYLRAVLRQDITFFDTDINTGDIMHGIASDVAQIQEVMGEKMAHFIHHIFTFICGYAVGFKRSWKVSLVVFSVTPLTMFCGMAYKALYGGLTAKEEASYRKAGSIAEQAISSIRTVFSFVAESKLAGKYAELLQKSAPIGARVGFAKGIGMGVIYLITYSTWALAFWYGSVLIARNELDGGSAIACFFGVNVGGRGLALALSYFAQFGQGTVAASRVFYIIERIPEIDSYSPEGRKLSGVRGRIELKSVSFAYPSRPDSLILHSLNLVLPSSKTVALVGASGGGKSTIFALIERFYDPIEGIITLDGHDLRTLQVKWLRDQIGMVGQEPILFATSILENVMMGKDNATKKEAIAACIAADAHSFISSLPLSYDTQVGDRGTKLSGGQKQRIALARAMVKDPKILLLDEPTSALDAESESAVQRAIDKISASRTTIVIAHRIATVKNAHAIVVLEHGSVTEIGDHRQLMAKAGAYYNLVKLATEAISKPLAIENEMQNANDLSIYDKPISGLSGSRYLVDDIDIPWPKGLKSTQEEEEKKHQDMEDKQDKMARKYSLSEVWKLQKPEFVMLFSGLILGMFAGAILSLFPLVLGISLGVYFGHDTHKMKRDVGRLCLTLVGLGFGCILSMTGQQGFCGWAGSKLTQRVRDLLFQSILKQEPGWFDFEENSTGVLVSRLSLDCVSFRSVLGDRFSVLLMGLSSAAVGLGVSFAFNWRLTLVAAAVTPFALGASYISLIINVGPRVDNDSYAKASNIASGAVSNIRTVTTFSAQEQIVKSFDRALSEPRRKSLRSSQLQGLMFGLFQGSMYGAYTLTLWFGAYLVEHDKAKLGDVFKIFLILVLSSFSVGQLAGLAPDTTMAAAAIPAVQDIIKRRPLIDNDRTKGRIVDRSKRFNIEFKMVTFAYPSRPEVTVLRDFCLKVKGGSTVALVGPSGSGKSTVIWLTQRFYDPDQGKVMMSGIDLREIDVKWLRRQMALVGQEPSLFAGSIRENIAFGDPNASWTEIEEAAKEAYIHKFISGLPQGYETQVGESGVQLSGGQKQRIAIARAILKKSRVLLLDEASSALDLESEKHIQEALKKVTKEATTIIVAHRLSTIREADKIAVMRDGEVVEYGSHDNLMASNQNGLYACLVRAETEANAFA* 1516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0088 1515 CDD ABC_MTABC3_MDL1_MDL2 620 857 - -
Gso16g0088 1515 Coils Coil 905 929 - -
Gso16g0088 1515 MobiDBLite consensus disorder prediction 40 64 - -
Gso16g0088 1515 CDD ABC_6TM_Pgp_ABCB1_D1_like 297 593 - -
Gso16g0088 1515 CDD ABC_6TM_Pgp_ABCB1_D2_like 936 1251 - -
Gso16g0088 1515 CDD ABC_MTABC3_MDL1_MDL2 1269 1507 - -
Gso16g0088 1515 SUPERFAMILY ABC transporter transmembrane region 277 604 IPR036640 GO:0005524|GO:0016021
Gso16g0088 1515 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1263 1506 IPR027417 -
Gso16g0088 1515 MobiDBLite consensus disorder prediction 1 26 - -
Gso16g0088 1515 ProSitePatterns ABC transporters family signature. 1408 1422 IPR017871 GO:0005524
Gso16g0088 1515 SUPERFAMILY ABC transporter transmembrane region 935 1252 IPR036640 GO:0005524|GO:0016021
Gso16g0088 1515 MobiDBLite consensus disorder prediction 8 26 - -
Gso16g0088 1515 MobiDBLite consensus disorder prediction 155 180 - -
Gso16g0088 1515 Gene3D ABC transporter type 1, transmembrane domain 911 1256 IPR036640 GO:0005524|GO:0016021
Gso16g0088 1515 Gene3D ABC transporter type 1, transmembrane domain 276 642 IPR036640 GO:0005524|GO:0016021
Gso16g0088 1515 MobiDBLite consensus disorder prediction 155 175 - -
Gso16g0088 1515 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 620 856 IPR003439 GO:0005524
Gso16g0088 1515 Pfam ABC transporter transmembrane region 296 567 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso16g0088 1515 Pfam ABC transporter transmembrane region 948 1217 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso16g0088 1515 PANTHER ABC TRANSPORTER B FAMILY 96 1514 - -
Gso16g0088 1515 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 612 856 IPR027417 -
Gso16g0088 1515 Gene3D - 643 863 IPR027417 -
Gso16g0088 1515 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1269 1505 IPR003439 GO:0005524
Gso16g0088 1515 PANTHER - 96 1514 - -
Gso16g0088 1515 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 949 1233 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso16g0088 1515 SMART AAA_5 647 848 IPR003593 -
Gso16g0088 1515 SMART AAA_5 1296 1482 IPR003593 -
Gso16g0088 1515 ProSitePatterns ABC transporters family signature. 759 773 IPR017871 GO:0005524
Gso16g0088 1515 Gene3D - 1262 1513 IPR027417 -
Gso16g0088 1515 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 297 585 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso16g0088 1515 Pfam ABC transporter 638 787 IPR003439 GO:0005524
Gso16g0088 1515 Pfam ABC transporter 1288 1435 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0088 Gso-Chr16 964044 972736 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0088 919 1515 Calmodulin-binding Proteins AT2G36910 36.318 5.73e-108 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0088 K05658 - gmx:100816700 2922.49