Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0085 ATGGCGACCAAAAATTTACCTATGGAGCTGCACGAAATCACCACCGAGTTCGAAGGATCCGACCCGGACTCCGAATGGGACGATTCGAAAGAAGACCCTGATTTCGACTTGCTCGAAGAAACTCATAGCAAGTTCTCAATCCTCTCACTTAAGCACAAGGCAAAAGCGCGCGTTGTCGAAGATAAGGGTCTAGGCGAGGAGGTGAATGCTTCTGCTCATGATGGAGAGAACTTTCAGAAAGTTCAAAAATTAATCCAAGTGGGACCGTTAGAGAAATTGAAAGTGGATGAATGCAAGTTGTATCTGAGGAAGAATGGTCTGAGGCTAACTGGAAACAAGGATACACTTATACAACGCATAAAGGAGCATTTAGATATTTTAAATGGAGGGGAGAAGAAGTATCCACCTTCAAGCTTTGTGTTGAATTGTAAAGGTGATGCATGCACTGGTGATGTTGTTTTGTTTGAGCAAAATGTCTATGAAATGTTTAACATAGCATCCAGGAGTGCAAGTGGTCCACCTTGTGGCAAAAGGATTGTCGCAGGCCGCATAGTGAAAGAAAGTTATGGTGCTGCTAAACAACAGCATACGTTTACGAAATGGGAGGATGAAGCAAAAAGGCAGAAAATATTGATGGAAAAACACTCAAGGGGATCTCTTGCTAGGGAAGATAGAGAAGCAAGGATGCAAGAAAAGGAAAAGAGGAAAAAAATTAAGGAAAATAGGGTCTCCAAAAAGGATTCAGCAAGGAACCAAAGTCAATCAAATTCACACATTACAAGGCCACAATATCAACCTCAAGAAACAAATGTACCCATTAATCCAGAAAAGCCAGAATTTCCATCTCGAAATTCAGGTTTATCTGCCAACATAAGGAAAGAAACATCCTCTATTGTACATAAACCAGCAGCTGTAACTGGACACCATGTTGATTCTAAAACTTTAGGAAGAACCTCATTTACTGACAATATGCATAATCAGCAAGCTTGGAGCACAGGTGACTGTAGGAATATTTCTGATATTGGTCACATGAGGAGGGGAGCTGATCATAGTGCATACTACAATTATGGTGACTCCCATTTCAGAGAAAAACCAACTGTTATTCTGAAATACCACCATCATTATCATCATAGGATGCCTTTGGCAAATGCAAACCACTCTCAACAGGTGCTACCAGATAGAGAAAGCTATGATAAGCAAAAGCAGGTGTGTAGACATTATGCCCGTGGGAGATGCTATTATGGGGACAACTGCAAATTCTTGCATGATTTGAGAGACAAAGGGAATGTGTGA 1293 0.4114 MATKNLPMELHEITTEFEGSDPDSEWDDSKEDPDFDLLEETHSKFSILSLKHKAKARVVEDKGLGEEVNASAHDGENFQKVQKLIQVGPLEKLKVDECKLYLRKNGLRLTGNKDTLIQRIKEHLDILNGGEKKYPPSSFVLNCKGDACTGDVVLFEQNVYEMFNIASRSASGPPCGKRIVAGRIVKESYGAAKQQHTFTKWEDEAKRQKILMEKHSRGSLAREDREARMQEKEKRKKIKENRVSKKDSARNQSQSNSHITRPQYQPQETNVPINPEKPEFPSRNSGLSANIRKETSSIVHKPAAVTGHHVDSKTLGRTSFTDNMHNQQAWSTGDCRNISDIGHMRRGADHSAYYNYGDSHFREKPTVILKYHHHYHHRMPLANANHSQQVLPDRESYDKQKQVCRHYARGRCYYGDNCKFLHDLRDKGNV* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0085 430 ProSiteProfiles Zinc finger C3H1-type profile. 398 425 IPR000571 GO:0046872
Gso16g0085 430 SMART sap_9 90 124 IPR003034 -
Gso16g0085 430 MobiDBLite consensus disorder prediction 211 287 - -
Gso16g0085 430 SMART c3hfinal6 399 424 IPR000571 GO:0046872
Gso16g0085 430 Gene3D - 387 429 - -
Gso16g0085 430 MobiDBLite consensus disorder prediction 211 247 - -
Gso16g0085 430 MobiDBLite consensus disorder prediction 248 272 - -
Gso16g0085 430 Pfam SAP domain 90 124 IPR003034 -
Gso16g0085 430 ProSiteProfiles SAP motif profile. 90 124 IPR003034 -
Gso16g0085 430 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 4 199 IPR045124 GO:0003723|GO:0045892
Gso16g0085 430 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 200 426 IPR045124 GO:0003723|GO:0045892
Gso16g0085 430 MobiDBLite consensus disorder prediction 1 32 - -
Gso16g0085 430 SUPERFAMILY SAP domain 80 125 IPR036361 -
Gso16g0085 430 Coils Coil 220 242 - -
Gso16g0085 430 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 62-LIKE 4 199 - -
Gso16g0085 430 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 62-LIKE 200 426 - -
Gso16g0085 430 SUPERFAMILY CCCH zinc finger 397 423 IPR036855 GO:0046872
Gso16g0085 430 Pfam CCCH-type zinc finger 403 423 IPR041367 -
Gso16g0085 430 Gene3D SAP domain 71 136 IPR036361 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0085 Gso-Chr16 947916 951244 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso16g0085 SAP 8.2e-10 CL0306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0085 - - gmx:100815642 861.677