Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gso16g0080 | ATGCAGAATCACAGGCTGAAGCAGCAGCAACAAGCTCTGATGCAGCAAGCTCTTCTCCAACAACAGTCTCTCTACCACCCTGGTCTCCTTGCTCCTCCTCAGATTGAACCAATTCCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTATGTCGGGAACATCCATACGCAGGTAACTGAGCCGCTTTTGCAAGAAGTTTTTGCGGGTACTGGCCCAGTTGAAGCTTGTAAGCTTATCAGAAAGGATAAGTCATCCTATGGATTCATTCATTACTTTGATCGCAGATCTGCTGCTCTTGCCATATTATCTCTCAATGGAAGGCATCTATTTGGGCAGCCTATCAAAGTTAATTGGGCATATGCGAGTGGTCAGAGAGAGGATACGTCAGGTCATTACAACATTTTTGTTGGCGATCTAAGTCCTGAGGTTACTGATGCTACGCTGTTTGCATGCTTTTCTGTCTATCCCACTTGTTCAGATGCTAGGGTTATGTGGGATCAGAAGACTGGGCGTTCAAGGGGATTTGGATTTGTTTCATTCCGTAATCAACAGGATGCACAAAGTGCTATAAATGATTTGACTGGTAAGTGGCTTGGAAGTAGACAAATACGCTGTAACTGGGCAACAAAAGGTGCTGGTGGTACTGAAGAGAAGCAAAACTCAGATGCAAAAAGTGTGGTGGAACTAACGTATGGCTCATCTGATGGTAAAGAGACCTCTAACAGTGATGCTCCTGAGAACAATCCTCAGTATACTACGGTTTATGTGGGTAACCTTGCTCCGGAGGCAACTCAACTTGATCTCCATCACCACTTCCATTCTCTTGGAGCTGGAGTGATTGAGGAGGTTCGTGTCCAGCGTGATAAAGGGTTTGGTTTTGTGAGGTACAGTACTCATGCTGAAGCAGCTCTAGCCATTCAGATGGGAAATGCCCAGTCTCTTCTCTGTGGAAAACAAATTAAGTGCTCTTGGGGGAGCAAGCCCACTCCAGCCGGAACTGCTTCAAATCCCCTTCCCCCACCTGCTGCTGCATCTTTGCCTGGCCTCTCAACTGATCTTTTGGTGTATGAGCGACAGCTAGCAATGAGCAAGATGGGCGGCGTCCATGCTTTGATGCATCCCCAAGGGCAACATCCTCTTAAACAAGCAGCTATTGGAGCTAGCCAGGCAATATATGATGGTGGGTTCCAGAATGTTGCAGCTGCACAGCAAATGATGTACTACCAATAA | 1248 | 0.4679 | MQNHRLKQQQQALMQQALLQQQSLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFAGTGPVEACKLIRKDKSSYGFIHYFDRRSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGTEEKQNSDAKSVVELTYGSSDGKETSNSDAPENNPQYTTVYVGNLAPEATQLDLHHHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNAQSLLCGKQIKCSWGSKPTPAGTASNPLPPPAAASLPGLSTDLLVYERQLAMSKMGGVHALMHPQGQHPLKQAAIGASQAIYDGGFQNVAAAQQMMYYQ* | 416 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gso16g0080 | 415 | Gene3D | - | 137 | 236 | IPR012677 | - | |
Gso16g0080 | 415 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 138 | 216 | IPR000504 | GO:0003723 | |
Gso16g0080 | 415 | SMART | rrm1_1 | 259 | 329 | IPR000504 | GO:0003723 | |
Gso16g0080 | 415 | SMART | rrm1_1 | 139 | 212 | IPR000504 | GO:0003723 | |
Gso16g0080 | 415 | SMART | rrm1_1 | 54 | 123 | IPR000504 | GO:0003723 | |
Gso16g0080 | 415 | SUPERFAMILY | RNA-binding domain, RBD | 132 | 220 | IPR035979 | GO:0003676 | |
Gso16g0080 | 415 | Gene3D | - | 238 | 338 | IPR012677 | - | |
Gso16g0080 | 415 | SUPERFAMILY | RNA-binding domain, RBD | 248 | 338 | IPR035979 | GO:0003676 | |
Gso16g0080 | 415 | PANTHER | OLIGOURIDYLATE-BINDING PROTEIN 1B-LIKE ISOFORM X1 | 2 | 396 | - | - | |
Gso16g0080 | 415 | PANTHER | TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED | 2 | 396 | - | - | |
Gso16g0080 | 415 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 260 | 319 | IPR000504 | GO:0003723 | |
Gso16g0080 | 415 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 55 | 121 | IPR000504 | GO:0003723 | |
Gso16g0080 | 415 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 140 | 210 | IPR000504 | GO:0003723 | |
Gso16g0080 | 415 | CDD | RRM1_TIA1_like | 55 | 125 | - | - | |
Gso16g0080 | 415 | Gene3D | - | 1 | 136 | IPR012677 | - | |
Gso16g0080 | 415 | CDD | RRM2_PUB1 | 139 | 213 | - | - | |
Gso16g0080 | 415 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 258 | 333 | IPR000504 | GO:0003723 | |
Gso16g0080 | 415 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 53 | 127 | IPR000504 | GO:0003723 | |
Gso16g0080 | 415 | CDD | RRM3_TIA1_like | 258 | 333 | - | - | |
Gso16g0080 | 415 | SUPERFAMILY | RNA-binding domain, RBD | 37 | 131 | IPR035979 | GO:0003676 | |
Gso16g0080 | 415 | SMART | rrm2_1 | 139 | 212 | IPR003954 | GO:0003676 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gso16g0080 | Gso-Chr16 | 914220 | 920544 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gso16g0080 | 48 | 334 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 29.043 | 2.60e-23 | 100 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gso16g0080 | K13201 | - | gmx:100814415 | 816.224 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Gso7g0367 | 7 | 3474822 | 3481348 | Gso16g0080 | 16 | 914220 | 920544 | GST |