Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0080 ATGCAGAATCACAGGCTGAAGCAGCAGCAACAAGCTCTGATGCAGCAAGCTCTTCTCCAACAACAGTCTCTCTACCACCCTGGTCTCCTTGCTCCTCCTCAGATTGAACCAATTCCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTATGTCGGGAACATCCATACGCAGGTAACTGAGCCGCTTTTGCAAGAAGTTTTTGCGGGTACTGGCCCAGTTGAAGCTTGTAAGCTTATCAGAAAGGATAAGTCATCCTATGGATTCATTCATTACTTTGATCGCAGATCTGCTGCTCTTGCCATATTATCTCTCAATGGAAGGCATCTATTTGGGCAGCCTATCAAAGTTAATTGGGCATATGCGAGTGGTCAGAGAGAGGATACGTCAGGTCATTACAACATTTTTGTTGGCGATCTAAGTCCTGAGGTTACTGATGCTACGCTGTTTGCATGCTTTTCTGTCTATCCCACTTGTTCAGATGCTAGGGTTATGTGGGATCAGAAGACTGGGCGTTCAAGGGGATTTGGATTTGTTTCATTCCGTAATCAACAGGATGCACAAAGTGCTATAAATGATTTGACTGGTAAGTGGCTTGGAAGTAGACAAATACGCTGTAACTGGGCAACAAAAGGTGCTGGTGGTACTGAAGAGAAGCAAAACTCAGATGCAAAAAGTGTGGTGGAACTAACGTATGGCTCATCTGATGGTAAAGAGACCTCTAACAGTGATGCTCCTGAGAACAATCCTCAGTATACTACGGTTTATGTGGGTAACCTTGCTCCGGAGGCAACTCAACTTGATCTCCATCACCACTTCCATTCTCTTGGAGCTGGAGTGATTGAGGAGGTTCGTGTCCAGCGTGATAAAGGGTTTGGTTTTGTGAGGTACAGTACTCATGCTGAAGCAGCTCTAGCCATTCAGATGGGAAATGCCCAGTCTCTTCTCTGTGGAAAACAAATTAAGTGCTCTTGGGGGAGCAAGCCCACTCCAGCCGGAACTGCTTCAAATCCCCTTCCCCCACCTGCTGCTGCATCTTTGCCTGGCCTCTCAACTGATCTTTTGGTGTATGAGCGACAGCTAGCAATGAGCAAGATGGGCGGCGTCCATGCTTTGATGCATCCCCAAGGGCAACATCCTCTTAAACAAGCAGCTATTGGAGCTAGCCAGGCAATATATGATGGTGGGTTCCAGAATGTTGCAGCTGCACAGCAAATGATGTACTACCAATAA 1248 0.4679 MQNHRLKQQQQALMQQALLQQQSLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFAGTGPVEACKLIRKDKSSYGFIHYFDRRSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGTEEKQNSDAKSVVELTYGSSDGKETSNSDAPENNPQYTTVYVGNLAPEATQLDLHHHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNAQSLLCGKQIKCSWGSKPTPAGTASNPLPPPAAASLPGLSTDLLVYERQLAMSKMGGVHALMHPQGQHPLKQAAIGASQAIYDGGFQNVAAAQQMMYYQ* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0080 415 Gene3D - 137 236 IPR012677 -
Gso16g0080 415 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 138 216 IPR000504 GO:0003723
Gso16g0080 415 SMART rrm1_1 259 329 IPR000504 GO:0003723
Gso16g0080 415 SMART rrm1_1 139 212 IPR000504 GO:0003723
Gso16g0080 415 SMART rrm1_1 54 123 IPR000504 GO:0003723
Gso16g0080 415 SUPERFAMILY RNA-binding domain, RBD 132 220 IPR035979 GO:0003676
Gso16g0080 415 Gene3D - 238 338 IPR012677 -
Gso16g0080 415 SUPERFAMILY RNA-binding domain, RBD 248 338 IPR035979 GO:0003676
Gso16g0080 415 PANTHER OLIGOURIDYLATE-BINDING PROTEIN 1B-LIKE ISOFORM X1 2 396 - -
Gso16g0080 415 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 2 396 - -
Gso16g0080 415 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 260 319 IPR000504 GO:0003723
Gso16g0080 415 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 55 121 IPR000504 GO:0003723
Gso16g0080 415 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 140 210 IPR000504 GO:0003723
Gso16g0080 415 CDD RRM1_TIA1_like 55 125 - -
Gso16g0080 415 Gene3D - 1 136 IPR012677 -
Gso16g0080 415 CDD RRM2_PUB1 139 213 - -
Gso16g0080 415 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 258 333 IPR000504 GO:0003723
Gso16g0080 415 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 53 127 IPR000504 GO:0003723
Gso16g0080 415 CDD RRM3_TIA1_like 258 333 - -
Gso16g0080 415 SUPERFAMILY RNA-binding domain, RBD 37 131 IPR035979 GO:0003676
Gso16g0080 415 SMART rrm2_1 139 212 IPR003954 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0080 Gso-Chr16 914220 920544 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0080 48 334 Eukaryotic Initiation Factors Gene Family AT4G34110 29.043 2.60e-23 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0080 K13201 - gmx:100814415 816.224
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0367 7 3474822 3481348 Gso16g0080 16 914220 920544 GST