Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0078 ATGGCCATAGCTCCGGCAATAATCCTCCAGCCAACTCTCATCATCATCGTCACTTTGCCTGCGATATATTCCATGACAGAAGCTGAAGCTTTGGTGAGTCTCAAAAGTTCATTCTCCAATCCTGAACTTTTGGATACTTGGGTCCCCGGTTCTGCACCTTGCAGTGAAGAAGATCAATGGGAAGGTGTTGCCTGCAACAACGGCGTTGTAACGGGGCTTCGCCTTGGAGGAATCGGGTTAGCAGGGGAAATACACGTTGATCCATTGCTTGAACTCAAGGGTCTTCGAACCATCAGCCTCAACAACAATGCTTTCTCAGGTTCCATGCCTGAATTCCACAGAATCGGGTTCTTGAAGGCCTTGTATTTGCAAGGAAACAAGTTTTCTGGGGATATTCCCATGGATTATTTCCAGAGAATGAGGTCTTTGAAGAAACTGTGGCTTGCTGATAACCAATTCACGGGGAAGATTCCATCATCGCTGGTCGAAATTCCTCAGCTCATGGAGTTGCACCTTGAGAACAACCAGTTTGTTGGAAATATTCCTGATCTGAGTAACCCATCCTTGGTGAAATTCAATGTTTCCAACAACAAATTGGAAGGTGGAATCCCTGCTGGTTTGTTGAGATTCAATGTGAGTTCTTTTTCAGGGAACTCTGGTCTTTGTGATGAAAAGTTAGGGAAATCATGTGAAAAGACAATGGAGCCCCCAAGCCCTAGTCCCATTGTTGGTGATGATGTGCCTTCTGTGCCACATAGAAGTAGCTCATTTGAGGTTGCTGGCATTATACTAGCAAGTGTGTTTCTTGTCTCACTAGTTGTGTTTTTAATCGTGAGATCAAGGAGAAAGAAGGAGGAGAATTTTGGCACAGTTGGACAAGAGGCGAATGAAGGTTCAGTGGAAGTTCAAGTGACTGCACCAGTGAAAAGGGATTTGGACACAGCTTCAACTTCAAGTACACCGGTGAAAAAATCATCTTCCAGAAGGGGATGTATATCTTCTCAGAGCAAAAACGCTGGAGAGCTTGTGATGGTGAACAACGAGAAGGGCGTGTTTGGGATGCCCGATTTGATGAGGGCGGCCGCGGAAGTGCTCGGAAATGGAAGCTTTGGATCTTCTTACAAGGCCGTCTTGGCTAATGGAGTGGCAGTGGTGGTGAAAAGAACTAGAGAGATGAATGTTTTGGAGAAAGATGATTTTGATGCAGAGATGAGGAAGCTAACAATGCTTAAACACTGGAATATATTGACACCTTTAGCTTATCATTTCAGAAAGGATGAGAAACTAGTCATCTCTGAGTATGTTCCAAGAGGCAGTTTATTGTTTTCTCTGCATGGTGATAGGGGAGCATCTCATGTTGAGCTAGATTGGCCTGCTCGTTTGAAGATTGTACGAGGAATCGCGCAAGGAATGCATTATCTTTACACAGTACTTGGTTCCTCGGATCTTCCACACGGGAATCTCAAGTCCAGCAATGTTCTCCTTGGACCAGACAATGAACCAATGCTTGTAGATTACGGGTTCAGCCACATGGTTAACCCTTCAACCATTGCACAAACACTATTCGCTTACAAGGCACCAGAGGCAGCACAACAAGGCCAGGTTTCGCGCAGTTGCGATGTTTACTGTCTTGGTGTTGTGATAATTGAGATACTGACAGGGAGGTTCCCTTCTCAGTATCTCAGCAATGGAAAGGGTGGGGCTGATGTGGTGCAATGGGTGGAAACTGCAATCTCTGAGGGAAGGGAATCAGAAGTGCTTGATCCTGAGATTGCAGGCTCTAGGAATTGGCTTGGTGAGATGGAGCAACTCCTCCACATTGGTGCTGCTTGCACTGAAAGCAACCCTCAGTGGCGGTTAGACATGGCGGAAGCCGTTAGAAGGATAATGGAGATTAAATTCGAGGGTGGACATGAATCAAGAAGCTTTGCAGATTCTCATCATGGTGAACAATCACAGAGGAGACATGGAACAAACAGCTTCGGAAGCTGGGATAATATCGAATATGGCAGCTCCTAG 2019 0.4572 MAIAPAIILQPTLIIIVTLPAIYSMTEAEALVSLKSSFSNPELLDTWVPGSAPCSEEDQWEGVACNNGVVTGLRLGGIGLAGEIHVDPLLELKGLRTISLNNNAFSGSMPEFHRIGFLKALYLQGNKFSGDIPMDYFQRMRSLKKLWLADNQFTGKIPSSLVEIPQLMELHLENNQFVGNIPDLSNPSLVKFNVSNNKLEGGIPAGLLRFNVSSFSGNSGLCDEKLGKSCEKTMEPPSPSPIVGDDVPSVPHRSSSFEVAGIILASVFLVSLVVFLIVRSRRKKEENFGTVGQEANEGSVEVQVTAPVKRDLDTASTSSTPVKKSSSRRGCISSQSKNAGELVMVNNEKGVFGMPDLMRAAAEVLGNGSFGSSYKAVLANGVAVVVKRTREMNVLEKDDFDAEMRKLTMLKHWNILTPLAYHFRKDEKLVISEYVPRGSLLFSLHGDRGASHVELDWPARLKIVRGIAQGMHYLYTVLGSSDLPHGNLKSSNVLLGPDNEPMLVDYGFSHMVNPSTIAQTLFAYKAPEAAQQGQVSRSCDVYCLGVVIIEILTGRFPSQYLSNGKGGADVVQWVETAISEGRESEVLDPEIAGSRNWLGEMEQLLHIGAACTESNPQWRLDMAEAVRRIMEIKFEGGHESRSFADSHHGEQSQRRHGTNSFGSWDNIEYGSS* 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0078 672 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Gso16g0078 672 SUPERFAMILY L domain-like 24 216 - -
Gso16g0078 672 Gene3D Phosphorylase Kinase; domain 1 331 434 - -
Gso16g0078 672 Gene3D Transferase(Phosphotransferase) domain 1 435 652 - -
Gso16g0078 672 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 9 638 - -
Gso16g0078 672 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 9 638 - -
Gso16g0078 672 MobiDBLite consensus disorder prediction 655 672 - -
Gso16g0078 672 Gene3D Ribonuclease Inhibitor 21 114 IPR032675 -
Gso16g0078 672 Pfam Protein kinase domain 363 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g0078 672 SUPERFAMILY Protein kinase-like (PK-like) 363 629 IPR011009 -
Gso16g0078 672 Pfam Leucine rich repeat 118 177 IPR001611 GO:0005515
Gso16g0078 672 MobiDBLite consensus disorder prediction 311 333 - -
Gso16g0078 672 MobiDBLite consensus disorder prediction 640 654 - -
Gso16g0078 672 ProSiteProfiles Protein kinase domain profile. 359 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g0078 672 Gene3D Ribonuclease Inhibitor 117 232 IPR032675 -
Gso16g0078 672 MobiDBLite consensus disorder prediction 640 672 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0078 Gso-Chr16 889772 892524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0078 13 632 Receptor kinase-like Gene Family AT3G42880 43.622 0.0 535
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Gso16g0078 Pkinase 2.3e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0078 - - gmx:100814059 1304.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0364 7 3437391 3439937 Gso16g0078 16 889772 892524 GST