Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0063 ATGCCTTCCAAGAGGCTTCAATGGAGATCCTTAGTACTTGGTTGTTTCAAGGCCACCAAGAACCAATCCTTGGAATCTCCAAACATAGTTTCCAAGAAATCATCTTCAAGTAGAATCTTCCTTTCTGATTTAAGCCTAAGCGATTATTCATCAGTTTCTATCATGAGTGATTTGTCCAATTCTCTCGTGGGATCAAATCTTCGTATTTTCACCTACCAAGAGCTCTCTGAGGTTACACACAACTTCAGCAAATCCAACTATCTTGGGGAAGGTGGGTTTGGGAAGGTGTATAAAGGATTTATTGATGACAATCTTAAACGTGGATTGAAAGCTCAGACTGTGGCAGTTAAGGCCTTAAACTTGGATGGAAAACAAGGCCACAGAGAGTGGTTGGCTGAAGTAATCTTTCTGGGGCAATTGAAACATCGCCATCTGGTTAACTTAATTGGCTACTGCTGTGAAGATGAGCATAGGCTTCTTGTGTATGAGTACATGGAGAGGGGCAATCTAGAGGAAAAGCTTTTCAAAGGTTATTTAGCAGCCTTGCCTTGGCTAACAAGAATCAAAATAGCAATTGGGGCCGCAAAGGGACTTATGTTTCTTCATGAAGAAGAGAAACCAGTCATATATAGAGATATCAAGGCCTCAAACATTCTATTAGACTCTGATTACAATCCCAAGCTCTCTGATTTCGGTTTAGCAATAGATGGACCGGAAAAAGACCAAACACATATCACGACTCATGTGATGGGTACACATGGTTATGCTGCCCCTGAGTACATCATGACAGGCCATTTGACAACCATGAGTGATGTATATAGCTTTGGAGTTGTTCTCCTAGAGCTCCTCACAGGAAAGAAGTCTGTGGACAAGAAAAGACCCACCAGAGAGCAGGATTTGGTGGAATGGGCAAGGCCATTGTTGAAGGATTCCCATAAACTAGAAAGAATAATGGACACAAGACTTGAGGATCAGTACTCAACTGAAGGGGCTAGAAAATTTGCAGCCTTGGCTTATCAATGTCTTAGCCATCATGCAAAGGCTAGACCCACCATGAGAACCGTGGTTAGGACCTTAGAGCCTCTATTGGAACTGAAAGATATCCCTGTAGGTCCTTTTGTCTATGTGGTGCCCAGTGAAGAAGACAAAACCAAAGTGAATGAAAATGACCATGTTGAGATCAACCAAGGTGAGTTAAAAACCAAAGAAAAAGAAGAAAAGGGTCACCACCGGCAACGAAAAAGTCGTCGCAATAGACGTCGTGTTAAGCCATTGAGGTCTCTTACTGCTCACTCTGACACTGCTCTGTATAAAACTCTTGGTACAAATCTGTACTCTCCAAAACAAGCACAATAA 1356 0.4218 MPSKRLQWRSLVLGCFKATKNQSLESPNIVSKKSSSSRIFLSDLSLSDYSSVSIMSDLSNSLVGSNLRIFTYQELSEVTHNFSKSNYLGEGGFGKVYKGFIDDNLKRGLKAQTVAVKALNLDGKQGHREWLAEVIFLGQLKHRHLVNLIGYCCEDEHRLLVYEYMERGNLEEKLFKGYLAALPWLTRIKIAIGAAKGLMFLHEEEKPVIYRDIKASNILLDSDYNPKLSDFGLAIDGPEKDQTHITTHVMGTHGYAAPEYIMTGHLTTMSDVYSFGVVLLELLTGKKSVDKKRPTREQDLVEWARPLLKDSHKLERIMDTRLEDQYSTEGARKFAALAYQCLSHHAKARPTMRTVVRTLEPLLELKDIPVGPFVYVVPSEEDKTKVNENDHVEINQGELKTKEKEEKGHHRQRKSRRNRRRVKPLRSLTAHSDTALYKTLGTNLYSPKQAQ* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0063 451 Gene3D Transferase(Phosphotransferase) domain 1 165 368 - -
Gso16g0063 451 SMART serkin_6 82 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g0063 451 MobiDBLite consensus disorder prediction 409 425 - -
Gso16g0063 451 Pfam Protein tyrosine and serine/threonine kinase 85 359 IPR001245 GO:0004672|GO:0006468
Gso16g0063 451 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Gso16g0063 451 Gene3D Phosphorylase Kinase; domain 1 53 164 - -
Gso16g0063 451 SUPERFAMILY Protein kinase-like (PK-like) 57 359 IPR011009 -
Gso16g0063 451 PANTHER BNAA02G16030D PROTEIN 29 419 - -
Gso16g0063 451 MobiDBLite consensus disorder prediction 386 433 - -
Gso16g0063 451 ProSitePatterns Protein kinases ATP-binding region signature. 88 117 IPR017441 GO:0005524
Gso16g0063 451 MobiDBLite consensus disorder prediction 386 408 - -
Gso16g0063 451 CDD STKc_IRAK 88 362 - -
Gso16g0063 451 ProSiteProfiles Protein kinase domain profile. 82 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g0063 451 PANTHER OS01G0588500 PROTEIN-RELATED 29 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0063 Gso-Chr16 725050 727451 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0063 68 416 Glycoside Hydrolase AT3G07070 46.459 7.60e-99 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gso16g0063 PK_Tyr_Ser-Thr 7.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0063 - - gmx:100788896 848.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0349 7 3280987 3283384 Gso16g0063 16 725050 727451 GST