Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0061 ATGTCTCATCAGGAGCAAGCCGTGTTGTCCCTTCTCTCCAAGCTCGCCCTTTCCTTCGACGGTGCCGTTTTGGGCGTTGCCTTGGCCTTCGCCGCCGTCCGCACCCTCTTCAAATTCACCGCCACCTCCGCCTCCCTCCGCAAGCTCCGCCGCGCACCCTCCATCTCCGTCTCCGACCTCCGCTCCCTCCTCGCCGAGCCACCCTCCGATGCCGACGCCGGCGAAATCGTAATTATCCGTGGCACTGTCGACGCCAAGTCCGCCGTCGACGGCACCTGGAAAACTTTGAAACCCGGCGTATTGGTTTCTCGCGAGTCCGGCGATAAAGGTGTCATTCTTCAAAGAACTCAAACGTGTATATACAATGACTGGAAAGGCTTATTGGGATGGACTTCTGACCTTCGAGCCATATGTGCAAGATCTTTGAGGCAGCAAGACTCTACATCTTTTAGGAAGGTGCCTTTTGTTCTAATTGATGTTGGACGGCGGCCAAATGCTGAGTATGTTGTTGTCAACATGGATGGATCAAGACATTCATTACCTCTGACAACCGTTTATCATAAATTGCAACCAATAAATGCTTCTCCTTATACTTTCTTGCAAGCACTTTTTGGGCATGAATATCCGGTTGGACTACTAGATGAAGAGAAAATTCTTCCATTGGGGAAGGATATCACTGCTGTTGGCCATTGCAGTTTAAAAAATGGAATTGCTGAAATTAAGTCCTGCAAAGATATACCATATTTTTTGTCTGACTTGAGTAAAGATCAGATGATAGTAGATCTTTCCATCAAGGCGAAAATACTGTTTTGGGGTGGTATTTCACTTGGTTCGATGTCAGTTGGGGTACTTGGCTATGCAGTTTTGAGGAACTGGATTAAGTGGAAACGGTGGAAGGTACAGAGGCAGCTCCAGCAACAAAGGCAAGCGGTGAGTGATGCTGAACCTCAGGTGGATGATGAGATTGAAGATGTTCCAGATGGACAATTATGTGTGATATGTCTGATGAGGAGAAGGCGTTCTGTCTTCATTCCCTGTGGGCATCTTGTGTGTTGCCAAGGGTGTGCCATATCAGTTGAACGTGAAGTTGCACCCAAATGTCCTGTTTGTCGTCAGGAGATTCGAGATTCAGTGCGGACTTATGAATCTTGA 1152 0.4809 MSHQEQAVLSLLSKLALSFDGAVLGVALAFAAVRTLFKFTATSASLRKLRRAPSISVSDLRSLLAEPPSDADAGEIVIIRGTVDAKSAVDGTWKTLKPGVLVSRESGDKGVILQRTQTCIYNDWKGLLGWTSDLRAICARSLRQQDSTSFRKVPFVLIDVGRRPNAEYVVVNMDGSRHSLPLTTVYHKLQPINASPYTFLQALFGHEYPVGLLDEEKILPLGKDITAVGHCSLKNGIAEIKSCKDIPYFLSDLSKDQMIVDLSIKAKILFWGGISLGSMSVGVLGYAVLRNWIKWKRWKVQRQLQQQRQAVSDAEPQVDDEIEDVPDGQLCVICLMRRRRSVFIPCGHLVCCQGCAISVEREVAPKCPVCRQEIRDSVRTYES* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0061 383 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 315 383 IPR013083 -
Gso16g0061 383 SMART ring_2 331 370 IPR001841 -
Gso16g0061 383 ProSiteProfiles Zinc finger RING-type profile. 331 371 IPR001841 -
Gso16g0061 383 SUPERFAMILY RING/U-box 320 376 - -
Gso16g0061 383 Pfam Zinc finger, C3HC4 type (RING finger) 329 376 - -
Gso16g0061 383 Pfam E3 Ubiquitin ligase 143 284 IPR022170 GO:0004842|GO:0006996|GO:0016567
Gso16g0061 383 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SPL2 1 383 IPR044247 GO:0004842
Gso16g0061 383 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SPL2 1 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0061 Gso-Chr16 686284 691362 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0061 277 376 C3H Transcription Factor Family AT3G06140 28.000 1.59e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0061 K15688 - gmx:100785166 719.153