Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0056 ATGATGAGTGCAAGTGCAGGTGCAAGAAATAGGTCTCCGTTCACACAAACTCAGTGGCAAGAGCTTGAGCAACAAGCTCTTGTTTTTAAGTACATGGTTACAGGAACACCTATCCCACCAGATCTCATCTACTCTATTAAAAGAAGTCTAGACACTTCAATTTCTTCAAGGCTCTTCCCACATCATCCAATTGGGTGGGGATGTTTTGAAATGGGATTTGGCAGAAAAGTAGACCCAGAGCCAGGGAGGTGCAGAAGAACAGATGGCAAGAAATGGAGATGTTCAAAGGAGGCATATCCAGACTCAAAGTACTGTGAAAGACACATGCACAGAGGCAGAAACCGTTCAAGAAAGCCTGTGGAAGTTTCTTCAGCAACAAGCACCGCCACAAACACCTCCCAAACAATCCCATCATCTTATACCAGAAACCTTTCCTTGACCAATAACAGTAACCCCAACATAACACCACCACCACCACCCTCTTCTTTCCCTTTCTCTCATTTGCCCTCTTCTATGCCTATTGATCAGTCCCAACCCTTTTCCCAATCCTACCAAAACTCTTCTCTCAATCCCTTCTTCTACTCCCAATCAACCTCCTCTAGACCCCCAGATGCTGATTTTCCACCCCAAGATGCCACCACCCACCACCTATTCATGGACTCTGCTGGCTCTTATTCTCATGATGAAAAGAATTATAGCAGGCATGTTCATGGAATAAGGGAAGATGTGGATGAGAGAGCTTTCTTCCCAGAAGCATCAGGATCAGCTAGGAGCTATACAGACTCGTACCAACAACTATCAATGAGCTCCTACAAGTCCTATTCAAACTCCAACTTTCAGAACATTAATAATGATGCCACCACCAACCCAAGACAGCAAGAGCAGCAACTACAACAACAACAACACTGTTTTGTTTTAGGGACAGACTTCAAATCAACAAGGCCAAGCAAAGAGAAAGAAGCTGAGACAACAACAGGTCAGAGACCCCTTCACCGTTTCTTTGGGGAGTGGCCACCAAAGAACACAACAACAGATTCCTGGCTAGATCTTGCTTCCAACTCCAGAATCCAAACCGATGAATGA 1083 0.4488 MMSASAGARNRSPFTQTQWQELEQQALVFKYMVTGTPIPPDLIYSIKRSLDTSISSRLFPHHPIGWGCFEMGFGRKVDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEVSSATSTATNTSQTIPSSYTRNLSLTNNSNPNITPPPPPSSFPFSHLPSSMPIDQSQPFSQSYQNSSLNPFFYSQSTSSRPPDADFPPQDATTHHLFMDSAGSYSHDEKNYSRHVHGIREDVDERAFFPEASGSARSYTDSYQQLSMSSYKSYSNSNFQNINNDATTNPRQQEQQLQQQQHCFVLGTDFKSTRPSKEKEAETTTGQRPLHRFFGEWPPKNTTTDSWLDLASNSRIQTDE* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0056 360 MobiDBLite consensus disorder prediction 108 210 - -
Gso16g0056 360 PANTHER - 6 359 IPR031137 GO:0005634|GO:0006351|GO:0032502
Gso16g0056 360 MobiDBLite consensus disorder prediction 311 360 - -
Gso16g0056 360 Pfam WRC 79 121 IPR014977 -
Gso16g0056 360 ProSiteProfiles QLQ domain profile. 13 48 IPR014978 GO:0005524|GO:0005634|GO:0006355
Gso16g0056 360 SMART QLQ_2 12 48 IPR014978 GO:0005524|GO:0005634|GO:0006355
Gso16g0056 360 MobiDBLite consensus disorder prediction 152 166 - -
Gso16g0056 360 MobiDBLite consensus disorder prediction 312 326 - -
Gso16g0056 360 ProSiteProfiles WRC domain profile. 78 122 IPR014977 -
Gso16g0056 360 MobiDBLite consensus disorder prediction 339 360 - -
Gso16g0056 360 Pfam QLQ 13 46 IPR014978 GO:0005524|GO:0005634|GO:0006355
Gso16g0056 360 PANTHER GROWTH-REGULATING FACTOR-LIKE PROTEIN 6 359 - -
Gso16g0056 360 MobiDBLite consensus disorder prediction 279 299 - -
Gso16g0056 360 MobiDBLite consensus disorder prediction 167 204 - -
Gso16g0056 360 MobiDBLite consensus disorder prediction 119 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0056 Gso-Chr16 649180 651558 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0056 1 358 GRF Transcription Factor Family AT3G13960 39.951 5.19e-67 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Gso16g0056 WRC 2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0056 - - gmx:100814760 652.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0337 7 3185301 3187709 Gso16g0056 16 649180 651558 GST