Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0054 ATGAGTAACTGGTTGGGGTTCTCTCTCACTCCACACTTGAGGATTGATGAAGAATTTGAGAGAGAAAACCAAGAGCGTGGAGGAGGGTACCATCATCCTTCTCCTTCTTGTCACCCTCACTTGTCTGTTATGCCCCTTCGCTCTGATGGCTCTCTCTGTGTTGCTGACTCCTTTAGTCACTCTGCTGCATCTCAAGAATGGAGATATGATAGTGCAATAGGTGGAGGGAATTCCAATGAAGAAGGTCCAAAGCTTGAAGACTTTTTGGGTTGCTACTCAAACTCCCCCGCTAAGGTCTTTTGCCAAGACTCTCAGCCTGACCAAAACCAAAGCCAGAACAATGTTTCCAAAATCAATGTTAATGTGGCACCAAGCTTTTGCACCAACAATTCAGAGATTGAAACTGGGGATAATCTCACAAATCCTTCTTCCTTGCTCCATTCTTTCCATGCATATAATGATAACTCACATGCTCTTATCCCCACCAATGGCATGTACAAGTCCTGGTTGGCACAAACCCAGTTTTCTTCTGATGGAAAACCTTCAAATGAGGCTAATGGGTGCAATTTCCAATCTTTGTCCCTCACTATGAGCCCCAGTGTGCAAAATGGGGTGGGTGCAATTTCCTCTGTTCAAGTGAATGAGGATAGTAGGAAACGGGTCATGGCGAAATCTCATGCTAGAGAACCAGTTCCTCGCAAATCTATTGACACTTTTGGGCAAAGAACATCTCAATATCGTGGTGTTACAAGGCATAGATGGACTGGAAGATATGAGGCCCATTTGTGGGATAATAGTTGCAGAAAGGAAGGGCAAACAAGGAAAGGAAGGCAAGTTTACCTTGGTGGTTATGATAAGGAAGAAAAAGCAGCAAAGGCTTACGACTTAGCTGCACTCAAGTATTGGGGTCCAACAACTCACATAAATTTCCCTTTAAGCACTTATGAGAAGGAACTTGAAGAGATGAAGCACATGACCAGGCAAGAATTTGTCGCCAATTTAAGAAGGAAGAGCAGTGGATTTTCAAGAGGGGCATCTGTGTATAGAGGTGTGACAAGACACCATCAACATGGAAGGTGGCAGGCCCGAATAGGAAGGGTTGCAGGAAACAAGGACTTGTATCTTGGTACATTTAGCACACAAGAAGAAGCTGCTGAAGCATATGATATAGCAGCAATCAAGTTCAGAGGAACAAGTGCTGTGACCAACTTTGACATAAGTAGGTATGATGTGAAGAGAATCTGCTCAAGCTCCACTCTTATTGCAGGAGATCTTGCAAAACGGTCTCCTAAAGAATCACCAGCTCCGGTTCCTGCCTCTGACTTCAATTCGTGCGGTTCATCGCCGATGCCGCTGGTGTCTCAGCCACCTCCTTTGGCTATAACTGATGGTGAACATTCTGATGAGTTGTCCAACATGATGTGGAATGCCAACAACAGTGATGAGCAAGCACAGAATGAGAGTGGTGGTGCTGAATTCAACAACAATGTAACTGAATCATCATCATCACAACAGGTTTCACCAAGCAGCAACAAGGATGCTTTGAACCCTCAAAGCCCCAATGAGTTTGGAGTCAGTGGAGCAGATTATGGACATGGCTACTTCACCCTTGATGGACCAAAATATGATGATGGGAACAATGAAAATGACCACATGAGCACCAACAGGCTTGGAAATTTGGGATTGGTTAATCAAGTTCCCATGTTTGCTTTGTGGAATGAATGA 1725 0.4441 MSNWLGFSLTPHLRIDEEFERENQERGGGYHHPSPSCHPHLSVMPLRSDGSLCVADSFSHSAASQEWRYDSAIGGGNSNEEGPKLEDFLGCYSNSPAKVFCQDSQPDQNQSQNNVSKINVNVAPSFCTNNSEIETGDNLTNPSSLLHSFHAYNDNSHALIPTNGMYKSWLAQTQFSSDGKPSNEANGCNFQSLSLTMSPSVQNGVGAISSVQVNEDSRKRVMAKSHAREPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEEKAAKAYDLAALKYWGPTTHINFPLSTYEKELEEMKHMTRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIAGDLAKRSPKESPAPVPASDFNSCGSSPMPLVSQPPPLAITDGEHSDELSNMMWNANNSDEQAQNESGGAEFNNNVTESSSSQQVSPSSNKDALNPQSPNEFGVSGADYGHGYFTLDGPKYDDGNNENDHMSTNRLGNLGLVNQVPMFALWNE* 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0054 574 SUPERFAMILY DNA-binding domain 346 407 IPR016177 GO:0003677
Gso16g0054 574 ProSiteProfiles AP2/ERF domain profile. 347 405 IPR001471 GO:0003700|GO:0006355
Gso16g0054 574 Pfam AP2 domain 245 303 IPR001471 GO:0003700|GO:0006355
Gso16g0054 574 Pfam AP2 domain 346 397 IPR001471 GO:0003700|GO:0006355
Gso16g0054 574 MobiDBLite consensus disorder prediction 480 527 - -
Gso16g0054 574 ProSiteProfiles AP2/ERF domain profile. 245 311 IPR001471 GO:0003700|GO:0006355
Gso16g0054 574 SMART rav1_2 347 411 IPR001471 GO:0003700|GO:0006355
Gso16g0054 574 SMART rav1_2 245 317 IPR001471 GO:0003700|GO:0006355
Gso16g0054 574 MobiDBLite consensus disorder prediction 426 465 - -
Gso16g0054 574 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 35 506 - -
Gso16g0054 574 PRINTS Ethylene responsive element binding protein signature 246 257 IPR001471 GO:0003700|GO:0006355
Gso16g0054 574 PRINTS Ethylene responsive element binding protein signature 387 407 IPR001471 GO:0003700|GO:0006355
Gso16g0054 574 MobiDBLite consensus disorder prediction 480 523 - -
Gso16g0054 574 CDD AP2 346 407 IPR001471 GO:0003700|GO:0006355
Gso16g0054 574 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 35 506 - -
Gso16g0054 574 SUPERFAMILY DNA-binding domain 244 313 IPR016177 GO:0003677
Gso16g0054 574 CDD AP2 244 313 IPR001471 GO:0003700|GO:0006355
Gso16g0054 574 Gene3D AP2/ERF domain 244 313 IPR036955 GO:0003700|GO:0006355
Gso16g0054 574 Gene3D AP2/ERF domain 347 407 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0054 Gso-Chr16 618536 622561 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0054 1 435 AP2-EREBP Transcription Factor Family AT1G72570 51.404 1.06e-140 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Gso16g0054 AP2 6.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0054 K09285 - gmx:100809762 1135.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0335 7 3157413 3161449 Gso16g0054 16 618536 622561 GST