Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0052 ATGGGTAGAAGTCGTTGTTGTTCCAAGGAAGGGTTGAACAAAGGAGCATGGACAGCTCTGGAAGATAGAATTTTGACAGAATACATTAACATTCATGGCGAAGGAAAATGGAGGCACTTGCCCAAAAGAGCAGGTCTTAAGAGATGTGGGAAAAGTTGCAGGCTAAGATGGTTGAATTATCTGAGACCTGGCATTAAAAGAGGCAACATTACTAATGATGAAGAGGAGCTTATAATTAGGCTTCACAATCTTCTTGGAAACAGGTGGTCTTTGATTGCTGGACGGCTTCCAGGACGAACAGACAATGAAATCAAGAATTATTGGAACACCAACATTGGGAGGAAACTTCAAAATGGTGGTGCAGGAACCACTTTAAACACACTTCAACAAGAAGATCAAAACGTTAAAGAACAAGAGTGGCACTATGATAAGGGTTCGTGTCTTGTTCAGACAAAAGCAACAAGGTGGACTAAGGTCACAGTCACCAATGAAATTAGTCAACCCAATGAAGGGATTACAATTAAGAGCAATGTTGGTGATAACAAAATGAAGGGTTTTCTAGTGTCTCCATCTAAAGAGAGTAACAATGATTCAGTGTTGTTGGATTTCATGGCAGATTTTGAGATGGATGGAAACTTCTTCTCGGAGCTCCTTAAGATGGATTTGCCCGAATCATCTTGTAAGGAAAATAAGATACTCGGAGATAATGGTAACCCTAGCACGGTTGATAAAGTCTATTTATCTCCAAAATCATCCTGTGATACCGCCCACTTCCCTTGGGGTGATTCATTCTATGATACAAATTTTGATTTTCTACCAGTGACAATTTTTATGGAGTCCGGATTTGATTGGCTCTGA 858 0.4009 MGRSRCCSKEGLNKGAWTALEDRILTEYINIHGEGKWRHLPKRAGLKRCGKSCRLRWLNYLRPGIKRGNITNDEEELIIRLHNLLGNRWSLIAGRLPGRTDNEIKNYWNTNIGRKLQNGGAGTTLNTLQQEDQNVKEQEWHYDKGSCLVQTKATRWTKVTVTNEISQPNEGITIKSNVGDNKMKGFLVSPSKESNNDSVLLDFMADFEMDGNFFSELLKMDLPESSCKENKILGDNGNPSTVDKVYLSPKSSCDTAHFPWGDSFYDTNFDFLPVTIFMESGFDWL* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0052 285 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 238 - -
Gso16g0052 285 CDD SANT 16 61 IPR001005 -
Gso16g0052 285 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gso16g0052 285 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Gso16g0052 285 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gso16g0052 285 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gso16g0052 285 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gso16g0052 285 CDD SANT 71 112 IPR001005 -
Gso16g0052 285 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Gso16g0052 285 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 238 - -
Gso16g0052 285 Gene3D - 70 144 - -
Gso16g0052 285 SMART sant 13 63 IPR001005 -
Gso16g0052 285 SMART sant 66 114 IPR001005 -
Gso16g0052 285 Gene3D - 14 66 - -
Gso16g0052 285 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0052 Gso-Chr16 607995 609454 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0052 1 131 MYB Transcription Factor Family AT4G38620 70.229 7.20e-60 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso16g0052 Myb_DNA-binding 8.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0052 K09422 - gmx:100809225 602.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0333 7 3146102 3153978 Gso16g0052 16 607995 609454 GST