Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0051 ATGGGTAGACGACCCTGCTGCCCCAAAGAGATCAACAAAGGTGCTTGGTCTCGAGAAGAAGATGAAACCCTCTCCAAATATGTTTCCATCCATGGAGAAGGAAAATGGCAGAAGGTTGCCCAAAATGCAGGGTTAAAGCGATGTGGAAAGAGTTGCAGACAAAGATGGTTGAATTATCTCAAGCCCGGTATAAAAAGAGGCCACATCTCTGTGGATGAAGAGGATATGATTATAAGACTTCATCGTCTTCTTGGTAACAGATGGGCATTGATTGCAAAGAGGCTACCTGGACGAACAGACAATGAAATCAAGAACTATTGGAACACAAATCTGTCAAAGAAGTTACAAAAACATCCAACATCATCAGTTTCTTCACTTCAACACAAACGTCATGAAAAAGAAAAAACCATACAAATGCATGTATCACCCGAAGCACCACGGCCTAGGAGAGTTAATGCAGTTGAATACAGTAAAAATTTGGAGAATGGTGGGTGTGGAAATAGACCTAGTACAACTCCCAGTCCCTCAAATAAAGTAGAGGGTAGTAGTGAAGAAGCTTCTTTTAGTGATTTCCTCATCCACGACATTGATCAAAACCAATTTTTGATTGCTGATGATTCAAACTCAAAGGTGCCACAAATGGAAGAAGATCACCACCACAACAACAAGGTGGAATTAATAACCAACAACAGTCCTAGCTCTTCATCACCTTCTGATCATTGTCACCATCTCTTGCCAGAGAAATTTGACCCTTTTGAGACCCTTTTGGATGTGGAGCTGGCTTCCTTTCTTGGATTTGAAAATGATTGA 810 0.4111 MGRRPCCPKEINKGAWSREEDETLSKYVSIHGEGKWQKVAQNAGLKRCGKSCRQRWLNYLKPGIKRGHISVDEEDMIIRLHRLLGNRWALIAKRLPGRTDNEIKNYWNTNLSKKLQKHPTSSVSSLQHKRHEKEKTIQMHVSPEAPRPRRVNAVEYSKNLENGGCGNRPSTTPSPSNKVEGSSEEASFSDFLIHDIDQNQFLIADDSNSKVPQMEEDHHHNNKVELITNNSPSSSSPSDHCHHLLPEKFDPFETLLDVELASFLGFEND* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0051 269 MobiDBLite consensus disorder prediction 117 185 - -
Gso16g0051 269 Pfam Myb-like DNA-binding domain 68 111 IPR001005 -
Gso16g0051 269 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Gso16g0051 269 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 245 - -
Gso16g0051 269 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 115 IPR017930 -
Gso16g0051 269 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Gso16g0051 269 MobiDBLite consensus disorder prediction 163 184 - -
Gso16g0051 269 MobiDBLite consensus disorder prediction 125 140 - -
Gso16g0051 269 CDD SANT 15 60 IPR001005 -
Gso16g0051 269 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Gso16g0051 269 SMART sant 12 62 IPR001005 -
Gso16g0051 269 SMART sant 65 113 IPR001005 -
Gso16g0051 269 Gene3D - 13 65 - -
Gso16g0051 269 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Gso16g0051 269 PANTHER MYB TRANSCRIPTION FACTOR 1 245 - -
Gso16g0051 269 CDD SANT 70 111 IPR001005 -
Gso16g0051 269 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 64 IPR017930 -
Gso16g0051 269 Gene3D - 69 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0051 Gso-Chr16 596982 598886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0051 1 199 MYB Transcription Factor Family AT4G09460 48.259 1.03e-54 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso16g0051 Myb_DNA-binding 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0051 K09422 - gmx:547568 549.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0331 7 3126747 3128656 Gso16g0051 16 596982 598886 GST