Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0038 ATGTTGAAGACGAAGCCATTCCAAGGCGCGAACGTGTTCATGTCGCGAAACCTCGTGCCGCCGGAAGTCTTCGACAAGCTACACGACGCGGTCAAAGATAACGGCGCCCAAATCCACCTCTGCTGCGACCCTTCCCGAAACGGCCCCAACGATTACCACATTATTTCTTCCAGCAAACACGAAAAGTTCGATGACCTCAAATCCAAGGGCTGTAAATTGCTCGGTCCTATATGTGTTCTTTCATGTGCCAAAGGAGGAAGGCCTCTTCCTAAACAAGGCTTTACTTGTTGCCTTGCCATGGACGGAGTCAAAGTACTTGCATCTGGCTTTGACACGGATGAGAAGGTTAAGATAGAAGAGTTAGTGGCTGAAATGGGAGGAGTTCTACACACTAAAGCATCATTGGATTTGAACTTTGTCGTTGTGAAAAATGTTTTAGCTGCGAAGTACAAGTGGGCTTTGAATATATTGAAGAAACCAATAGTCACTTATGAATGGTTAAAACAATGCTCAGATGAGCATCGTGTTGTTCCTCAAGAGTCATACAAGGTCCTTCCTTTCTCTGGGTTAAAGATTTGTGTTACTGGAATCCCAGCAGATAATCGTAAGGAGATGGAGAAGCTTATTTTACAAAATGGTGGAAAATACTCCGCAGAATTGACAAAGAAGTGCACACATTTGATTTCTGAGGCTCCTGAAGGTGACAAATATAAGGTGGCAAAACGATGGGGCCACATTCATATTGTGACAAGGAAATGGTTTGATCAATCTATTGCTCGAAAAGCATGTCTGAATGAGGAGTTGTTCGCTGTTCAGCATGGATCTGTATCTTCGCATAAAGTAACTAGGGACTTAACAATGCAACATAGCCAAGAAAAGGATTTCGGGAAATTGCACTCTGCGGCATCCTCAGGTGCTACAGATTCAAATGTGCAAGTTTTTTCTTGTGCTGAGTTTATGGATAGAGATCTCGAAGCTACACAGTCAGAACACATGTCTTCAGTTTCAAATGTTCCTTTATTTGCTAAGGAGGCAGATTCTGAACCTCTTCCATTGCAGACCTGCAGTGAATTGAACTTTGATGGTGCTGTTGCTAATGATTCTGAATCTGATGATAATGACCTGTACTTGTCAGAGTGCAGAATATTACTAGTTGGTTTTGAAGCATGTGAAATGCGGAAACTAGTTAATATGGTGCGTAAAGGTGGTGGCTCCCGGTATATGTCTTTTAATGACAAATTGACACACATAGTAATTGGGAATCCTACTGAAATGGAAAAGAAGGATGTGAGGAGTCTTGCTGCTTTAGGTGTAATTTATGTTGTTAAAACTGCATGGCTTGAAGATTGTGACCGTGAAAAGAAACAAGTCCCTGTTCTTAGGAGACACATTGCATATGATCTACTTTATCCAAAAGCAAAAGGAGCAGTAACAGGCAGTATGTCTATGGATCACGCTAAAATCTCCAGCTTTCATCAAAGATTGCATCAGGTGGACTTTGAAATTGTAAAGCCAGAATCTTTGGAGAAAAGAAAAGAAGAGAAAAAAGATATGGGTATAAATGGTCACTCTTTCAGTGAAGCAATAGGCAGAACGATGCTGCAAAATCAACTTCCTGATAATAAATTGAGCTCACAAAGGATGACCCAACATAACTCCAGTGTTCAATACACGAAGTCAGCAAATGTTTTTAGAGGGAAACTATTTTGTTTCTCAAATTTATATCCTGAAGAAAAGAGAGGTGAGGTTGTTCAATGGATAACTCAAGGGGGAGGAGAGATAATAAGTGGGCAAACAAAACAGAGTACGTACTATACTATTGAGTGTCACGGTGTAACACCCACGTTGACACGTGATTCCAAGAGTTTGTATATTTCTAGTCATTGGATACGATCTTGTTTGGAGGCTGGATCCTTGCTGGATGTTGACAGTCACATTCTTTATTCTCCACTTCCCTGCCGTGTTCCCTTGCCTGGGTTTGAAAGCTTCCGGTTTTGCTTTTCACAGTATGACGAGAAAGACAGAAATCTCCTAAGAAACTTGTGCTTTCATCTTGGAGCTAAATATGGGGAGAAGTTGACTAAGAAGGTTACCCATTTGTTGTGTAAATTCACCAATGGGCCCAAGTATGAGGCTGCTTGTAAATGGGGGATTCAATCGGTTACATCTGAATGGATATTTGAATGTGTCAAACAGAATGGAGTTGTGGCCATTGATCAGTTTTTACCAAAAGAAGTCACTGCTCAAGACCGAGATGCAGGAATTTGCACTGTGAGTCAATTTCCTACCCAGGCTGTTCAAATGATAAGTGACTTGCCCTCCCAGTTGTCTAGTCAATCACAAACTTTGAGAGGCACGACAAATAAAAATGTCAGTTGTGGAGTTGATAATCATGAGACCAGTTTTAGGATACCAAGTAATTATAGCAAAAAGGCAAGGCTTGTGGAGGAACCTTGCCTATCCAATAAGAAGCCTTCAGCTTCAAATTCAGGTATTCATGCTGATGACAAGAATTTTTCCAAAGACAATATGCTTATAGATGCCGGGGAGGCTTTTCATGCTGTTCCAGATGTTGCTGCTGCAATTGAGGACTTGTTAGAGCAGACTAGTAAGATGCATGATCAGAGGTCCCCAGCACAGACTGGGTGTGAGAGAAGTATTTACCCATCTGATCGCTCAGTCCTTAGTGAAGATAATTCCAATCCTCATACTGTCTTTGGATTATCTAAACACTGGTTAAACAGTGGAAGAAAAGATGATAATGGGGAGGCTTCTCAAGACAGAAGAGCAGGAATATATGATGGTTTTAGTGAAACACAGACAGAATCTCAGGTTGTTAGTTATGAAGAAGATTTATCAGGAAGGCAAATGCTTATAGATAGAGTCCGAACTCGAAGTAGCTTGCAGTGA 2910 0.4131 MLKTKPFQGANVFMSRNLVPPEVFDKLHDAVKDNGAQIHLCCDPSRNGPNDYHIISSSKHEKFDDLKSKGCKLLGPICVLSCAKGGRPLPKQGFTCCLAMDGVKVLASGFDTDEKVKIEELVAEMGGVLHTKASLDLNFVVVKNVLAAKYKWALNILKKPIVTYEWLKQCSDEHRVVPQESYKVLPFSGLKICVTGIPADNRKEMEKLILQNGGKYSAELTKKCTHLISEAPEGDKYKVAKRWGHIHIVTRKWFDQSIARKACLNEELFAVQHGSVSSHKVTRDLTMQHSQEKDFGKLHSAASSGATDSNVQVFSCAEFMDRDLEATQSEHMSSVSNVPLFAKEADSEPLPLQTCSELNFDGAVANDSESDDNDLYLSECRILLVGFEACEMRKLVNMVRKGGGSRYMSFNDKLTHIVIGNPTEMEKKDVRSLAALGVIYVVKTAWLEDCDREKKQVPVLRRHIAYDLLYPKAKGAVTGSMSMDHAKISSFHQRLHQVDFEIVKPESLEKRKEEKKDMGINGHSFSEAIGRTMLQNQLPDNKLSSQRMTQHNSSVQYTKSANVFRGKLFCFSNLYPEEKRGEVVQWITQGGGEIISGQTKQSTYYTIECHGVTPTLTRDSKSLYISSHWIRSCLEAGSLLDVDSHILYSPLPCRVPLPGFESFRFCFSQYDEKDRNLLRNLCFHLGAKYGEKLTKKVTHLLCKFTNGPKYEAACKWGIQSVTSEWIFECVKQNGVVAIDQFLPKEVTAQDRDAGICTVSQFPTQAVQMISDLPSQLSSQSQTLRGTTNKNVSCGVDNHETSFRIPSNYSKKARLVEEPCLSNKKPSASNSGIHADDKNFSKDNMLIDAGEAFHAVPDVAAAIEDLLEQTSKMHDQRSPAQTGCERSIYPSDRSVLSEDNSNPHTVFGLSKHWLNSGRKDDNGEASQDRRAGIYDGFSETQTESQVVSYEEDLSGRQMLIDRVRTRSSLQ* 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0038 969 ProSiteProfiles BRCT domain profile. 100 184 IPR001357 -
Gso16g0038 969 MobiDBLite consensus disorder prediction 913 927 - -
Gso16g0038 969 Gene3D BRCT domain 556 653 IPR036420 -
Gso16g0038 969 CDD BRCT_TopBP1_rpt2_like 658 733 - -
Gso16g0038 969 ProSiteProfiles BRCT domain profile. 372 464 IPR001357 -
Gso16g0038 969 CDD BRCT 103 170 - -
Gso16g0038 969 ProSiteProfiles BRCT domain profile. 660 743 IPR001357 -
Gso16g0038 969 SUPERFAMILY BRCT domain 562 649 IPR036420 -
Gso16g0038 969 Gene3D BRCT domain 97 185 IPR036420 -
Gso16g0038 969 SUPERFAMILY BRCT domain 186 271 IPR036420 -
Gso16g0038 969 Gene3D BRCT domain 362 461 IPR036420 -
Gso16g0038 969 ProSiteProfiles BRCT domain profile. 182 271 IPR001357 -
Gso16g0038 969 Pfam BRCT domain, a BRCA1 C-terminus domain 561 644 IPR001357 -
Gso16g0038 969 Pfam BRCA1 C Terminus (BRCT) domain 101 170 IPR001357 -
Gso16g0038 969 Gene3D BRCT domain 655 748 IPR036420 -
Gso16g0038 969 MobiDBLite consensus disorder prediction 912 950 - -
Gso16g0038 969 ProSiteProfiles BRCT domain profile. 559 647 IPR001357 -
Gso16g0038 969 SUPERFAMILY BRCT domain 656 744 IPR036420 -
Gso16g0038 969 SMART BRCT_7 657 733 IPR001357 -
Gso16g0038 969 SMART BRCT_7 374 454 IPR001357 -
Gso16g0038 969 SMART BRCT_7 4 86 IPR001357 -
Gso16g0038 969 SMART BRCT_7 184 261 IPR001357 -
Gso16g0038 969 SMART BRCT_7 97 174 IPR001357 -
Gso16g0038 969 SMART BRCT_7 561 637 IPR001357 -
Gso16g0038 969 Gene3D BRCT domain 34 94 IPR036420 -
Gso16g0038 969 SUPERFAMILY BRCT domain 59 183 IPR036420 -
Gso16g0038 969 MobiDBLite consensus disorder prediction 936 950 - -
Gso16g0038 969 SUPERFAMILY BRCT domain 372 458 IPR036420 -
Gso16g0038 969 CDD BRCT_TopBP1_rpt2_like 186 261 - -
Gso16g0038 969 Pfam twin BRCT domain 664 725 IPR001357 -
Gso16g0038 969 Pfam twin BRCT domain 190 253 IPR001357 -
Gso16g0038 969 Gene3D BRCT domain 186 273 IPR036420 -
Gso16g0038 969 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 7 957 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0038 1 968 Core DNA Replication Machinery Family AT1G77320 50.147 0.0 911
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0038 K10728 - gmx:100804966 1846.25