Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0036 ATGGACTCTCGCACGTATAATCCTCGCACCGTCGAAGAGGTTTTTAGGGATTTCAAGGGCCGAAGAGCTGGTCTCATCAAAGCCCTAACCACCGATGTTGAAGATTTCTACAACCAATGTGATCCTGAGAAGGAGAATTTGTGCTTGTATGGCTTTCCCAGTGAGCAGTGGGAAGTAAATTTACCTGCTGAAGAAGTACCACCAGAGCTTCCTGAGCCCGTACTGGGCATTAACTTTGCTAGGGATGGCATGCAAGAAAAAGACTGGCTATCTTTAGTTGCTGTTCATAGTGATGCATGGTTGCTTGCTATTGCATTCTATTTTGGAGCCAGATTTGGGTTTGATAAAGCTGACAGGAAACGGCTTTTCAACATGATCAATGAACTGCCAACAATATTTGAAGTTGTTACTGGTGCAGCAAAAAAGCAAGTTAAGGAGAAGTCTTCAGTTTCAAACCACAGTGGCAGCAAGTCTAAGTCCAGCTCTAAGCGGGCTCCAGAATCTCAGAGTAGACAGTCAAAGCCATTGCAACCAAAAGATGAGGATGAAGAACTGGACGATCAAGATGATGATGAACATGGAGAGACCTTGTGTGGGGCATGTGGTGAGCACTATGGCACTGATGAATTCTGGATTTGCTGTGACATCTGCGAGAAGTGGTTCCATGGTAAATGTGTGAAGATCACCCCTGCTAGGGCAGAGCATATCAAGCAATACAAGTGCCCATCTTGCAGTAACAAGAGAGCTCGGCCCTGA 756 0.4563 MDSRTYNPRTVEEVFRDFKGRRAGLIKALTTDVEDFYNQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDAWLLAIAFYFGARFGFDKADRKRLFNMINELPTIFEVVTGAAKKQVKEKSSVSNHSGSKSKSSSKRAPESQSRQSKPLQPKDEDEELDDQDDDEHGETLCGACGEHYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0036 251 Pfam PHD-finger 198 247 IPR019787 -
Gso16g0036 251 PANTHER CPG BINDING PROTEIN 5 251 IPR045104 GO:0006355|GO:0042393
Gso16g0036 251 SUPERFAMILY FYVE/PHD zinc finger 187 248 IPR011011 -
Gso16g0036 251 SMART PHD_3 197 245 IPR001965 -
Gso16g0036 251 MobiDBLite consensus disorder prediction 149 173 - -
Gso16g0036 251 MobiDBLite consensus disorder prediction 144 191 - -
Gso16g0036 251 ProSiteProfiles Zinc finger PHD-type profile. 195 247 IPR019787 -
Gso16g0036 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 246 IPR013083 -
Gso16g0036 251 PANTHER ALFIN-LIKE TRANSCRIPTION FACTOR 5 251 - -
Gso16g0036 251 Pfam Alfin 10 138 IPR021998 GO:0006355|GO:0042393
Gso16g0036 251 CDD PHD_AL_plant 197 247 IPR044104 -
Gso16g0036 251 ProSitePatterns Zinc finger PHD-type signature. 198 244 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0036 Gso-Chr16 385195 389237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0036 6 250 Alfin-like Transcription Factor Family AT3G42790 76.327 3.16e-126 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Gso16g0036 Alfin 3e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0036 - - gmx:100170700 471.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0315 7 2938424 2942273 Gso16g0036 16 385195 389237 GST
Gso15g0242 15 2199107 2204116 Gso16g0036 16 385195 389237 PCT
Gso11g3567 11 51402655 51406270 Gso16g0036 16 385195 389237 PCT
Gso16g0036 16 385195 389237 Gso15g0242 15 2199107 2204116 PCT
Gso16g0036 16 385195 389237 Gso11g3567 11 51402655 51406270 PCT