Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0028 ATGAAGAAGCTGACAGGTGGAGCTAGTAGTCCTGCTTCTTCATCCTCCCTAGCCATCCCCACCGCCAACCCTAAGCGATCCACCAAGGACAGGCACACCAAAGTCGACGGCCGCGGCCGCAGAATTCGAATGCCTGCCACCTGCGCCGCTAGGGTTTTCCAACTCACCAGAGAATTGGGCCATAAGTCCGACGGCGAGACCATCGAGTGGCTCCTCCAGCAGGCCGAGCCCGCCATCATCGCCGCCACCGGAACCGGTACCATCCCCGCCAATTTCTCCTCCCTCAACGTCTCCCTCCGTAGCAGCGGCTCCACTCTCTCGGCCCCGCCTTCCAAGTCTGCCCCGCACACCTTTCACGGCGCCCTCGCTCTCGCCCACCACCCTTACGAGGAAGCCTTTCAACACCCCGCCTTACTAGGCTTCCACCCTCACGCTCACCAACCGCAGCAGCTTCTCTCCGCCGATCACATCCCAGAATCCCTTCCCAGCGGCGCCGGTGACTCCGGCGACAACTACCTTAGAAAACGCTACCGAGAAGATCTCTTCAAAGACGATAACATCAACAACAACAATACCCAATCGCAGAACGAGAGCGGTGATGGTGATGGGTCTTCGCCTAAGTTACCGAAGCAGCAATCCGAAGCTGGTTCTGGGCTTCTTCGGCCCAGCAATTTGCTTCCCGCAACAGCGATGTGGGCCGTGGCACCCTCTCCCGCCAGTGGGCCCCCTGGTAGCACAATTTGGATGCTTCCCGTTACCGCGGGGGCTTCGTCTTCTGCTTCCTCGGAGACTCAGATGTGGCCGTTTCCTCAAAGTGTGAGTGGTTTCATGCCAAGGTTCAACCTTCCGGTTCCGGGTGCACTTGAATTCCAAGGCGCACGTGCGGGTTCGCTTCAGTTGGGGTCCATGTCAATGCCGCAGCAACAGCATCTGGGCCTCGCCATGTCCGACTCCAACTTGGGCATGTTGGCAGCACTTAATGCTTACACAAGGGCTAGTTTGAATGTTAATTCCGATCATCATCAACATCAGCATCAATCTCAACCAAGTGAGAGTGGAGAAGATGATCCTAATAGCTCCCAATGA 1086 0.5737 MKKLTGGASSPASSSSLAIPTANPKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSSLNVSLRSSGSTLSAPPSKSAPHTFHGALALAHHPYEEAFQHPALLGFHPHAHQPQQLLSADHIPESLPSGAGDSGDNYLRKRYREDLFKDDNINNNNTQSQNESGDGDGSSPKLPKQQSEAGSGLLRPSNLLPATAMWAVAPSPASGPPGSTIWMLPVTAGASSSASSETQMWPFPQSVSGFMPRFNLPVPGALEFQGARAGSLQLGSMSMPQQQHLGLAMSDSNLGMLAALNAYTRASLNVNSDHHQHQHQSQPSESGEDDPNSSQ* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0028 361 MobiDBLite consensus disorder prediction 1 41 - -
Gso16g0028 361 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 14 361 IPR005333 GO:0003700
Gso16g0028 361 MobiDBLite consensus disorder prediction 334 361 - -
Gso16g0028 361 MobiDBLite consensus disorder prediction 25 41 - -
Gso16g0028 361 MobiDBLite consensus disorder prediction 181 221 - -
Gso16g0028 361 MobiDBLite consensus disorder prediction 7 23 - -
Gso16g0028 361 PANTHER TRANSCRIPTION FACTOR TCP8 14 361 - -
Gso16g0028 361 Pfam TCP family transcription factor 27 146 IPR017887 -
Gso16g0028 361 MobiDBLite consensus disorder prediction 186 219 - -
Gso16g0028 361 ProSiteProfiles TCP domain profile. 28 82 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0028 Gso-Chr16 252786 254673 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0028 25 319 TCP Transcription Factor Family AT1G35560 49.505 4.92e-68 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Gso16g0028 TCP 3.1e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0028 - - gmx:100812983 681.404