Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0016 ATGGGGGACGAGTCGCCCAGAAACAAAGTGAAGTTCCTATGCAGCTACGGCGGGAAGGTCCTTCCAAGACCCTCCGATGGACTCCTAAGGTATGTTGGAGGCGAGACTCGTGTGGTTTCTGTCCCTCGTGAGATCACATTTCCCGAGCTAATGAAGAAGGTGAGTAGCATGGTGGAGGGAGTCGGAGATATGGTTCTAAAATACCAGCTGATACCAGAAGATCTGGACGCATTGGTGTCGGTGAGAACAGAGGAAGATGTGAAGCACATGATCGAGGAGCACGATCGGCACCATACTGGAGCCTTACTCCGTGCATTCCTCTTTCCCCCTTCCAAGCAAACAGGTTTGGTTGCGTGCGAACCGTATCTGTTGGAGCAGCGCTACATCGACGCCATAAATGGGATCATCCGAGCAAGCCCCAGGAAGGGCTCTGCCTGCTCTTCCCCAAAATCAAACTCCCCCGATGCATCCCCTCGCTTTTCCAATTCAAATTCATTGCATAGAGTCCAAAGCTCTCCTACCCTCACCGACCTTGGTGTGTTTTTGGATCATCAGCATCAAGGCCAACAACAGCAATATCATCACCCTAATTTTCATTTTTCTAGACCCCCCCAGGATCCTCAACGGCTTGGTGCAGGAAGGGTTCCCTCTTTTAACTATCATTACTCAAACATCACCAGACAACTCACCCACAGAGGAGACAGAGGAGGAGGTTACGCCTACTATGATGACTCTCCGCCATCCTATGCCCATGATAGAATTCATAGTGTGTCCAGGAGTCCTAGAAGAAAATCTATCTGGGAATGA 807 0.5019 MGDESPRNKVKFLCSYGGKVLPRPSDGLLRYVGGETRVVSVPREITFPELMKKVSSMVEGVGDMVLKYQLIPEDLDALVSVRTEEDVKHMIEEHDRHHTGALLRAFLFPPSKQTGLVACEPYLLEQRYIDAINGIIRASPRKGSACSSPKSNSPDASPRFSNSNSLHRVQSSPTLTDLGVFLDHQHQGQQQQYHHPNFHFSRPPQDPQRLGAGRVPSFNYHYSNITRQLTHRGDRGGGYAYYDDSPPSYAHDRIHSVSRSPRRKSIWE* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0016 268 PANTHER OS05G0427100 PROTEIN 4 222 - -
Gso16g0016 268 SMART PB1_new 24 110 IPR000270 GO:0005515
Gso16g0016 268 CDD PB1_UP2 13 108 - -
Gso16g0016 268 PANTHER OS05G0427100 PROTEIN-RELATED 4 222 - -
Gso16g0016 268 MobiDBLite consensus disorder prediction 144 169 - -
Gso16g0016 268 MobiDBLite consensus disorder prediction 187 211 - -
Gso16g0016 268 MobiDBLite consensus disorder prediction 140 169 - -
Gso16g0016 268 Gene3D - 30 109 - -
Gso16g0016 268 SUPERFAMILY CAD & PB1 domains 25 113 - -
Gso16g0016 268 Pfam PB1 domain 29 109 IPR000270 GO:0005515
Gso16g0016 268 MobiDBLite consensus disorder prediction 230 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0016 Gso-Chr16 154865 157792 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0016 3 152 MAP Kinase Kinase Kinase AT3G46920 42.593 4.42e-32 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0016 - - gmx:100800353 533.487