Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0014 ATGGCGTCTGCTAGCCTTGGAAGTGGTGGGGTGGGCAGTTCCAGGTCTGTTAATGGTGGCTTCAGGGGTTCTTCCAGTTCCGTCGATTGGCTTGGCAGAGAGATGCTTGAGATGTCTTTGAGAGACCACGAGGACGTTAGAGATAGTGAGCCTGACATCATTGATGGTTTGGGTGCTGAGACTGGTCACGTGATAAGAACCAGCGTTGGTGGCCGAAATGGTCAATCTAAGCAGAATGTTAGTTATATTTCTGAGCATGTTGTGGGAACAGGCTCTTTTGGTGTTGTTTTTCAAGCCAAATGTAGAGAAACGGGAGAAATTGTGGCCATCAAGAAAGTTCTCCAGGACAAGCGCTACAAGAATAGAGAGTTACAAATTATGCAAATGCTGGATCATCCAAATATTGTTGCCCTTAGGCATTGTTTCTATTCAACGACTGACAAAGAAGAAGTTTACTTGAATCTTGTACTTGAATATGTTCCTGAAACTGTGAATCGCATCGCCAGGAGCTATAGCAGGATTAACCAGCGAATGCCTTTAATATATGTAAAGCTTTATACCTACCAGATTTGCAGGGCCCTTGCTTATATACATAACTGCATTGGTATATGTCATCGTGACATCAAACCTCAGAACCTACTTGTGAACCCACACACTCATCAGCTGAAACTATGTGATTTTGGGAGTGCAAAAGTGTTGGTGAAAGGAGAACCTAATGTTTCTTACATCTGTTCAAGATACTACCGTGCTCCGGAACTTATATTTGGGGCCACTGAATATACAACTGCCATAGATATATGGTCAACTGGTTGTGTAATGGCTGAATTACTTCTTGGACAGCCCTTGTTTCCTGGAGAGAGTGGAGTTGATCAGCTAGTTGAAATCATCAAGGTTTTGGGAACTCCAACCAGGGAGGAGATAAAGTGCATGAACCCAAATTATACTGAATTTAAGTTTCCACAGATAAAACCTCATCCATGGCACAAGGTTTTTCAGAAACGTTTACCCCCAGAAGCAGTGGACCTTGTCTGTAGGTTCTTTCAGTACTCTCCCAATTTGAGATGCACTGCATTGGAAGCTTGCATTCATCCATTTTTTGATGAATTGAGGGACCCAAACACCCGCCTTCCTAATGGTCGACCACTTCCTCCACTGTTTAATTTTAAACCTCAGGAACTTTCTGGTGTACCCCCTGATGTCATCAATCGGCTTATTCCAGAGCATGCGCGTAAACAGAACTTATTTATGGCTTTGCACACCTAG 1263 0.4331 MASASLGSGGVGSSRSVNGGFRGSSSSVDWLGREMLEMSLRDHEDVRDSEPDIIDGLGAETGHVIRTSVGGRNGQSKQNVSYISEHVVGTGSFGVVFQAKCRETGEIVAIKKVLQDKRYKNRELQIMQMLDHPNIVALRHCFYSTTDKEEVYLNLVLEYVPETVNRIARSYSRINQRMPLIYVKLYTYQICRALAYIHNCIGICHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNVSYICSRYYRAPELIFGATEYTTAIDIWSTGCVMAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKPHPWHKVFQKRLPPEAVDLVCRFFQYSPNLRCTALEACIHPFFDELRDPNTRLPNGRPLPPLFNFKPQELSGVPPDVINRLIPEHARKQNLFMALHT* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0014 420 SMART serkin_6 82 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g0014 420 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
Gso16g0014 420 CDD STKc_GSK3 77 369 IPR039192 -
Gso16g0014 420 ProSitePatterns Protein kinases ATP-binding region signature. 88 112 IPR017441 GO:0005524
Gso16g0014 420 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 1 417 - -
Gso16g0014 420 Gene3D Phosphorylase Kinase; domain 1 67 161 - -
Gso16g0014 420 Pfam Protein kinase domain 84 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g0014 420 ProSiteProfiles Protein kinase domain profile. 82 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g0014 420 PANTHER SHAGGY-RELATED PROTEIN KINASE DELTA-RELATED 1 417 - -
Gso16g0014 420 SUPERFAMILY Protein kinase-like (PK-like) 81 393 IPR011009 -
Gso16g0014 420 Gene3D Transferase(Phosphotransferase) domain 1 162 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0014 Gso-Chr16 143031 148794 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0014 88 369 Core Cell Cycle Gene Families AT1G76540 35.862 3.35e-58 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Gso16g0014 Pkinase 2.9e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0014 K03083 - gmx:100820098 835.484