Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0002 ATGGCTTCCGCTGCGCCAGGTGCAACCAATGATGCTTTATACAAGGAATTGTGGCATGCCTGTGCTGGACCCCTTGTCACTCTTCCGCGTGAAGGGGAGAGAGTTTATTACTTCCCGCAAGGTCATATGGAACAGCTTGAGGCATCTATGAATCAGGGATTGGAGCAGCAAATGCCTTCCTTCAATCTGCCGTCTAAAATTTTATGTAAAGTGGTCAATGTTCATCTTCGAGCTGAACCTGAAACAGATGAAGTATATGCACAAATAACTTTGCTTCCTGAAGCAGATCAAAGCGAGGTGACAAGCCCTGATGATCCTTTGCCCGAATCTCCAAGGTGTACAGTCCATTCATTTTGCAAGACACTCACTGCTTCTGACACTAGCACTCATGGAGGTTTCTCTGTTCTTCGAAGGCATGCAGATGATTGCCTGCCGCCACTGGATATGACTCAACAGCCACCATGGCAAGAATTGGTTGCAACTGATCTGCATGGGAATGAATGGCATTTTAGACATATTTTTCGAGGACAACCTAGGCGCCACTTACTGACCACTGGGTGGAGTGTCTTTGTCAGTTCCAAAAAATTAGTGGCTGGTGATGCATTTATATTCTTAAGGGGTGAAAATGGAGAGCTGCGAGTTGGAGTTAGGAGACTCATGAGACAGCATAGCAACATGCCATCTTCTGTTATATCCAGTCACAGTATGCATCTGGGTGTCCTGGCTACTGCATCTCATGCCATTGCCACAGGAACATTGTTTTCTGTATTTTACAAGCCCAGAACTAGCCGGTCTGAGTTTATTGTGAGTGTCAACAAGTACCTTGAAGCTCAAAGTCATAAACTTTCTGTTGGGATGAGATTCAAAATGAGATTTGAGGGTGATGAAGTTCCTGAAAGAAGGTTCAGTGGTACGATTGTGGGTGTTGAAGATAATAAGTCATTAGTCTGGGCTGATTCTGAGTGGCGGTCATTAAAGGTTCAATGGGATGAACCATCGTCTATTTTGCGTCCTGATAGAGTTTCTCCATGGGAATTGGAGCCACTTGTGTCTAACCCTCCTACAAACTCCCAGCCATCCCAAAGAAACAAGAGATCGCGGCCTCCCATTCTACCTTCAACAATGCTTGATTCTTCTCTGCAAGGTGTATGGAAATCACCAGTTGAATCTGCACCATTCTCTTATCGTGACCATCAACATGGGCGAGATGTCTATCCATCAACCAATTTCAATTCCACTGCAACTGGTTTTCTTGGTTTTGGTGGGAACTGCTCTGCTTCCAACAAGTCAATATATTGGTCTAGTAGGATCGAAAACTCCACAGAATCTTTTTCTCCTGTAGCAGTTAAAGAATTTGGAGAGAAGAGACAAGGGACTGCAAATGGATGTAGGCTCTTTGGGATTCAGTTACATGACAATTCTAATTCTAATGAAGAAAGTCTACCAATGGTCAGTTTGTCAGGAAGGGTGGGTGATGATGGCCTCCTTCCATCTTTGGATGCTGAGTCTGACCAGCATTCTGAACCATCAAATGTTAATCGATCTGATTTCCCTTCGGTTCACATGCAAGGTATGGCTGTTGGAAGGGCTGTGGATTTAACACGGTTCGATGGATATGAGGATCTGCTAAGGAAATTGGAAGAGATGTTTGACATCAATGGTGAGCTCTGCGGATCGACAAAAGAATGGCAGGTTGTGTACACTGATAATGAAGATGATATGATGATGGTTGGGGATGATCCATGGCTTGAATTTTGTAGCATTGTGAGGAAAATTTTCATCTACACTGCAGAGGAGGTGAAGAAGCTTTCACCCAAAATAGGACTTCCAATCAGTGAAGAAGTTAAACCCTGCAAAATGGACTCTGAAGCAGTAGTCAATCCTGGGGACCAGTCATCTATTTTGGGGCCTGGTTGCTAA 1920 0.4427 MASAAPGATNDALYKELWHACAGPLVTLPREGERVYYFPQGHMEQLEASMNQGLEQQMPSFNLPSKILCKVVNVHLRAEPETDEVYAQITLLPEADQSEVTSPDDPLPESPRCTVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMTQQPPWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQHSNMPSSVISSHSMHLGVLATASHAIATGTLFSVFYKPRTSRSEFIVSVNKYLEAQSHKLSVGMRFKMRFEGDEVPERRFSGTIVGVEDNKSLVWADSEWRSLKVQWDEPSSILRPDRVSPWELEPLVSNPPTNSQPSQRNKRSRPPILPSTMLDSSLQGVWKSPVESAPFSYRDHQHGRDVYPSTNFNSTATGFLGFGGNCSASNKSIYWSSRIENSTESFSPVAVKEFGEKRQGTANGCRLFGIQLHDNSNSNEESLPMVSLSGRVGDDGLLPSLDAESDQHSEPSNVNRSDFPSVHMQGMAVGRAVDLTRFDGYEDLLRKLEEMFDINGELCGSTKEWQVVYTDNEDDMMMVGDDPWLEFCSIVRKIFIYTAEEVKKLSPKIGLPISEEVKPCKMDSEAVVNPGDQSSILGPGC* 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0002 639 SUPERFAMILY CAD & PB1 domains 520 592 - -
Gso16g0002 639 Pfam B3 DNA binding domain 118 218 IPR003340 GO:0003677
Gso16g0002 639 Gene3D - 115 220 IPR015300 -
Gso16g0002 639 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 10 601 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gso16g0002 639 SMART B3_2 118 220 IPR003340 GO:0003677
Gso16g0002 639 Gene3D - 281 353 - -
Gso16g0002 639 MobiDBLite consensus disorder prediction 503 518 - -
Gso16g0002 639 MobiDBLite consensus disorder prediction 346 372 - -
Gso16g0002 639 MobiDBLite consensus disorder prediction 349 372 - -
Gso16g0002 639 SUPERFAMILY DNA-binding pseudobarrel domain 109 247 IPR015300 -
Gso16g0002 639 MobiDBLite consensus disorder prediction 495 518 - -
Gso16g0002 639 ProSiteProfiles B3 DNA-binding domain profile. 118 220 IPR003340 GO:0003677
Gso16g0002 639 PANTHER AUXIN RESPONSE FACTOR 1 10 601 - -
Gso16g0002 639 ProSiteProfiles PB1 domain profile. 515 608 IPR000270 GO:0005515
Gso16g0002 639 Pfam AUX/IAA family 503 605 IPR033389 -
Gso16g0002 639 Gene3D - 512 604 - -
Gso16g0002 639 CDD B3_DNA 116 218 IPR003340 GO:0003677
Gso16g0002 639 Pfam Auxin response factor 244 326 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0002 Gso-Chr16 41698 48478 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0002 7 636 B3 DNA Binding Superfamily AT1G59750 67.625 0.0 869
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gso16g0002 AUX_IAA 8.9e-12 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0002 K14486 - gmx:100819023 1296.18