Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g2264 ATGAGAATGTCTCCACAAAGTGTAGCTCTTCCATTTTTCATCACCATGTTTGTCTCATTTGGGGTTTGTTTTGGCTCTTTCCTAGAGGACACATATCATCTTACTAATTATCAACGTTACTCCATGAAGCCAAATAATGAACATTTTGGTATCATGACAAGGGCTTATGGATCTACCCCATCTACAAGATCTCAAAGAAGGATTAATATTGATGACTATGGAGCCAAAGCTAGTGATGGAAGAGATGACACTGAGGCATTTGAGAAGGCATGGGATGAGGCATGTTCTACAGGGGGAATTCTTGTAGTTCCTGAAGAAAAGATATATCACTTAAAGCCAATAACTTTTTCAGGACCTTGCCTAACCAATACTGCCTTCAGGGTCTATGGAACAATCAAAGCATGGCCTAAAATGTCAACATACCAAAATGATAGACTACACTGGATTAAGTTTGAAAATGTCACAAATCTCAGAGTTGATGGGGGTGGCACTATCAATGGCAATGGGAGAAAATGGTGGGAAAACTCTTGCAAAAGGAATGAAAACCTTCCATGCAAACCTGCGCCAACTGCTGTGACTTTCTATCAATGCAACAACTTGAGAGTGACAAACCTGAGGTTCAAAAATGCACAGCAAATGCATATAAGGTTTCAAAAATGCAACAATGTTACAGCTTCGAATTTGATCGTGAGAGCACCGGGGAACAGCCCCAACACTGATGGAATTCACGTCACAGAGACACGAAATATTCTCATAAGCAATAGTATCATTGGGACAGGTGATGACTGTATTTCCATAGTAAGTGGGTCCCAAAATGTACGAGCCATAGATGTCAAGTGTGGACCAGGGCATGGAATCAGCATTGGAAGTTTAGGAGCTGGTGACTCTAAAGCTCAAGTGTCCAACGTGTTAGTGAACAGAGCCACCTTTACAGGAACGACTAATGGAGTTAGAATAAAGACTTGGCAGGGAGGTTCTGGCTATGCGAAAAATGTAAAATTTGTGAATATAACAATGCGAAATGTGACGAATCCCATAATTGTTGATCAAAACTACTGTGACCAGGACAAGCCATGCCATGAGAAGGACTCAGCAGTGAAATTGAGCAACATTGTATACCAAAACATCAGAGGAACAAGTGCTTCAGAAGTGGCAATCAAGTTTGACTGCAGCAAAACTGTTCCATGCAAAGGAATATACTTGCAAGATGTGATTTTAACACCAGAAGACCATGGTGGTGGTGGTAGTAGCACCATTGCTACATGTGAAAATGTTAGATATGTCCATCGGGGAAAGTTTTTTCCTCCATGCTCTACTTGA 1320 0.4106 MRMSPQSVALPFFITMFVSFGVCFGSFLEDTYHLTNYQRYSMKPNNEHFGIMTRAYGSTPSTRSQRRINIDDYGAKASDGRDDTEAFEKAWDEACSTGGILVVPEEKIYHLKPITFSGPCLTNTAFRVYGTIKAWPKMSTYQNDRLHWIKFENVTNLRVDGGGTINGNGRKWWENSCKRNENLPCKPAPTAVTFYQCNNLRVTNLRFKNAQQMHIRFQKCNNVTASNLIVRAPGNSPNTDGIHVTETRNILISNSIIGTGDDCISIVSGSQNVRAIDVKCGPGHGISIGSLGAGDSKAQVSNVLVNRATFTGTTNGVRIKTWQGGSGYAKNVKFVNITMRNVTNPIIVDQNYCDQDKPCHEKDSAVKLSNIVYQNIRGTSASEVAIKFDCSKTVPCKGIYLQDVILTPEDHGGGGSSTIATCENVRYVHRGKFFPPCST* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g2264 439 PANTHER - 41 438 - -
Gso15g2264 439 PANTHER POLYGALACTURONASE 41 438 - -
Gso15g2264 439 Gene3D - 53 432 IPR012334 -
Gso15g2264 439 Pfam Glycosyl hydrolases family 28 101 426 IPR000743 GO:0004650|GO:0005975
Gso15g2264 439 ProSitePatterns Polygalacturonase active site. 277 290 IPR000743 GO:0004650|GO:0005975
Gso15g2264 439 SMART pbh1 247 268 IPR006626 -
Gso15g2264 439 SMART pbh1 220 246 IPR006626 -
Gso15g2264 439 SMART pbh1 329 350 IPR006626 -
Gso15g2264 439 SMART pbh1 300 321 IPR006626 -
Gso15g2264 439 SUPERFAMILY Pectin lyase-like 61 438 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g2264 Gso-Chr15 51586521 51591464 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g2264 3 438 Glycoside Hydrolase AT3G07970 52.000 3.00e-158 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g2264 K01184 - gmx:100796446 915.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0104 12 894077 897258 Gso15g2264 15 51586521 51591464 PCT
Gso11g2287 11 38786238 38788422 Gso15g2264 15 51586521 51591464 PCT